Browse Element(s) Details


Os.51722.1.S1_at

Description gb:AK063528.1
DB_XREF= gi:32973546
TID=Os.51722.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A09, full insert sequence.
FL= gb:AK063528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0969011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09690Os.51368.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690Os.51722.1.S1_at11/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_x_at10/112+4974451..4984577expressed protein
LOC_Os02g09690OsAffx.2557.1.S1_at10/112+4974451..4984577expressed protein
LOC_Os02g09710OsAffx.24176.1.S1_at10/112+4985040..4985860hypothetical protein
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51722.1.S1_at--217--5771Chr02:4983526..4983550 (25 bp)
GACGACGCGGCCGTACATGAATGTC
LOC_Os02g09690
Os.51722.1.S1_at--321--5751Chr02:4983572..4983596 (25 bp)
GACGGCAGCGCCACTAGCATGAGCT
LOC_Os02g09690
Os.51722.1.S1_at--852--1651Chr02:4983605..4983629 (25 bp)
AGCGCGAACCCAAATGCGTAGTTAC
LOC_Os02g09690
Os.51722.1.S1_at--1033--10031Chr02:4983623..4983647 (25 bp)
TAGTTACCGACGAACATGGCGGCGT
LOC_Os02g09690
Os.51722.1.S1_at--704--1471Chr02:4983834..4983858 (25 bp)
AGCAATACCCCTCTGTTTGTACAAC
LOC_Os02g09690
Os.51722.1.S1_at--1008--6851Chr02:4983848..4983872 (25 bp)
GTTTGTACAACACACACATCGCCGG
LOC_Os02g09690
Os.51722.1.S1_at--860--8211Chr02:4983910..4983934 (25 bp)
GGAATTCAACAGGTGACCCTATGCT
LOC_Os02g09690
Os.51722.1.S1_at--587--8931Chr02:4983923..4983947 (25 bp)
TGACCCTATGCTCACCTAGAAACGT
LOC_Os02g09690
Os.51722.1.S1_at--125--1431Chr02:4983940..4983964 (25 bp)
AGAAACGTCATGACCCACTGACCGG
LOC_Os02g09690
Os.51722.1.S1_at--750--1011Chr02:4983979..4984003 (25 bp)
AGGTTCCTCGCGTTCTGATGAAATG
LOC_Os02g09690
Os.51722.1.S1_at--53--8051Chr02:4984003..4984027 (25 bp)
GGAGATCAACACTTCAATTTTCAAA
LOC_Os02g09690
Target Sequence 
GACGACGCGGCCGTACATGAATGTCGGGATGATGAGAAGCACCACCGACGGCAGCGCCACTAGCATGAGCTGCCTCATCA
GCGCGAACCCAAATGCGTAGTTACCGACGAACATGGCGGCGTTCATGACGAAGTTGGGCACCTTCTCGCTCAGCACGTCC
TGCACCACGAGGCTGTCGTTGGCCACGCTGGTGATCACCTCCGCCGTCGACCCCTTCTTCAGGTCGAAGTACTCCACGTC
TTGCCGGAGCACCGCCTGAAGGTACCGTGCCCGCATCCGCGACGCCTGCCGCTCCGCCGTCCGTGTCCAGCAATACCCCT
CTGTTTGTACAACACACACATCGCCGGCGGGAGTCAGCTCGCCTCGCCATCGCCGGCAGGCATTGGAATTCAACAGGTGA
CCCTATGCTCACCTAGAAACGTCATGACCCACTGACCGGCGGCCAAGAAGAGGAGGTTCCTCGCGTTCTGATGAAATGGA
GATCAACACTTCAATTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis