Browse Element(s) Details


Os.6254.1.S1_at

Description gb:AK111710.1
DB_XREF= gi:37988373
TID=Os.6254.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020E04, full insert sequence.
FL= gb:AK111710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0974011/11strubbelig receptor family 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09720OsAffx.11961.1.S1_at3/112+4989053..4997675ABC transporter family protein, putative, expressed
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6254.1.S1_at--795--10711Chr02:5027179..5027203 (25 bp)
TTGCGGACATAATCGCGCTGTGTGT
LOC_Os02g09740
Os.6254.1.S1_at--641--7851Chr02:5027508..5027532 (25 bp)
GGTAGTTCAGCAACTTGTTCGCCTG
LOC_Os02g09740
Os.6254.1.S1_at--320--6711Chr02:5027524..5027548 (25 bp)
GTTCGCCTGATGCAAAGGGCCAGCA
LOC_Os02g09740
Os.6254.1.S1_at--268--7671Chr02:5027577..5027601 (25 bp)
GGGATATTCATACAGAGCCCCTGAA
LOC_Os02g09740
Os.6254.1.S1_at--1024--4591Chr02:5027609..5027633 (25 bp)
GCGACATGAGAGACCTTTCCTTCTG
LOC_Os02g09740
Os.6254.1.S1_at--897--2811Chr02:5027636..5027660 (25 bp)
AAGTTCCTTCCATGGTACAAGGCGA
LOC_Os02g09740
Os.6254.1.S1_at--983--2591Chr02:5027728..5027752 (25 bp)
AACGCGAGTTGATCACACGATTCAT
LOC_Os02g09740
Os.6254.1.S1_at--587--4351Chr02:5027844..5027868 (25 bp)
CCAGTCATTGTTCTTCAGGCCTAAA
LOC_Os02g09740
Os.6254.1.S1_at--984--291Chr02:5027883..5027907 (25 bp)
ATAGCATGTTGGTCACTGATTCACA
LOC_Os02g09740
Os.6254.1.S1_at--82--1591Chr02:5027943..5027967 (25 bp)
AGCTCATGCTCAACTGTGTTAATTC
LOC_Os02g09740
Os.6254.1.S1_at--707--10711Chr02:5027991..5028015 (25 bp)
TTGCTTCAAAGCTCTTACACCTTAC
LOC_Os02g09740
Target Sequence 
TTGCGGACATAATCGCGCTGTGTGTTCAGCCTGAGCCCGAGTTTCGCCCTCCTATGTCTGAGGTAGTTCAGCAACTTGTT
CGCCTGATGCAAAGGGCCAGCATAGTGAGGCGACAATCTGGAGAAGAATTGGGATATTCATACAGAGCCCCTGAACGCGA
AGGCGACATGAGAGACCTTTCCTTCTGAGAAGTTCCTTCCATGGTACAAGGCGAAAAAAAACAGTTTGGAGGCTCAGTTA
CAAGAACTTTGGACTACTCATATGATGAAGATGAACTGGTGAACGCGAGTTGATCACACGATTCATGGTCGAACGGATTT
GAGAAGATAATTTTGGTACTTCATTGTTCAAATTTTGTTCATTCTTCTCCCCCTTTCTTTTTTTCATTTTTTGTTTCCCA
GTCATTGTTCTTCAGGCCTAAATCAATGGCATATGTATAGCATGTTGGTCACTGATTCACAGGTAGAGAAAAAGATGGAA
AAGAGATTTAACCTTGAGCTCATGCTCAACTGTGTTAATTCATACCAAGTGTTATTAATGATGATTGCTTCAAAGCTCTT
ACACCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis