Browse Element(s) Details


Os.27546.1.A1_at

Description gb:AK099853.1
DB_XREF= gi:32985062
TID=Os.27546.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110H01, full insert sequence.
FL= gb:AK099853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0977011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27546.1.A1_at--901--2271Chr02:5039607..5039631 (25 bp)
AAATCGCCACCCCTATATGATGAAT
LOC_Os02g09770
Os.27546.1.A1_at--721--5251Chr02:5039586..5039610 (25 bp)
GAATCTCCAGAGAGCTCAGGTCCAT
LOC_Os02g09770
Os.27546.1.A1_at--1109--2931Chr02:5039491..5039515 (25 bp)
AAGGCCAAGCATAGATCACAGACAA
LOC_Os02g09770
Os.27546.1.A1_at--1128--5611Chr02:5039471..5039495 (25 bp)
GACAAAGCACAGATCGCCGGGACAA
LOC_Os02g09770
Os.27546.1.A1_at--1150--6111Chr02:5039407..5039431 (25 bp)
GAGTGTGGACCAACCACGGGCTAGT
LOC_Os02g09770
Os.27546.1.A1_at--291--3351Chr02:5039393..5039417 (25 bp)
CACGGGCTAGTGTCGATCAGCCTGA
LOC_Os02g09770
Os.27546.1.A1_at--529--6431Chr02:5039379..5039403 (25 bp)
GATCAGCCTGATCGGCCAAGGAAAA
LOC_Os02g09770
Os.27546.1.A1_at--287--7051Chr02:5039170..5039194 (25 bp)
GTAACAACTGCATCTGGGAGCTGAA
LOC_Os02g09770
Os.27546.1.A1_at--908--3591Chr02:5039076..5039100 (25 bp)
CATTCGGGTGATTGGTTTGGTCGTT
LOC_Os02g09770
Os.27546.1.A1_at--1095--6611Chr02:5039054..5039078 (25 bp)
GTTGGAGGCGTGTCTCACTACAATG
LOC_Os02g09770
Os.27546.1.A1_at--884--8691Chr02:5038977..5039001 (25 bp)
TGTCCATAAGCATCTTCTTTTTCTT
LOC_Os02g09770
Target Sequence 
AAATCGCCACCCCTATATGATGAATCTCCAGAGAGCTCAGGTCCATCAGATAATACTCAAACAAACCCTGAAGGCACAGA
GGAATCTAGGAAAAGCACAGACTGCAGGGAGAAAACAAGGCCAAGCATAGATCACAGACAAAGCACAGATCGCCGGGACA
AATCAAGGGGCAGCACAGATAGGAGGGATAAAAACAGAAAGAGTGTGGACCAACCACGGGCTAGTGTCGATCAGCCTGAT
CGGCCAAGGAAAAGCGTTGACCGCTTTGGTGGGGTGATGAAGTCCGTCAGATATATCGACTGTTTCAGAGTAACAACTGC
ATCTGGGAGCTGAAGAAAAATATATATACCAAAAAGGTTAGCGTTGGGGTTCTCTGTATGTAGTCCATTTGTATAACTTA
ATTCATTCGGGTGATTGGTTTGGTCGTTGGAGGCGTGTCTCACTACAATGGGGGGGACTTGTATTGTTTTTCTTGATTTT
TTTCCAATATGAAATAATTATTTGTCCATAAGCATCTTCTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27546.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis