Browse Element(s) Details


OsAffx.2558.1.S1_at

Description tigr:9630.m00892
TID=OsAffx.2558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0976011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2558.1.S1_at--1107--4771Chr02:5033988..5034012 (25 bp)
GCTGCCAATGGCAAGAAAAGTCGAT
LOC_Os02g09760
OsAffx.2558.1.S1_at--655--3811Chr02:5033987..5034011 (25 bp)
CTGCCAATGGCAAGAAAAGTCGATG
LOC_Os02g09760
OsAffx.2558.1.S1_at--644--5051Chr02:5033986..5034010 (25 bp)
TGCCAATGGCAAGAAAAGTCGATGA
LOC_Os02g09760
OsAffx.2558.1.S1_at--612--4391Chr02:5033985..5034009 (25 bp)
GCCAATGGCAAGAAAAGTCGATGAA
LOC_Os02g09760
OsAffx.2558.1.S1_at--719--3191Chr02:5033983..5034007 (25 bp)
CAATGGCAAGAAAAGTCGATGAAAT
LOC_Os02g09760
OsAffx.2558.1.S1_at--420--9251Chr02:5033472..5033496 (25 bp)
TCCTTTCGTCCTCGGATGGTCATCA
LOC_Os02g09760
OsAffx.2558.1.S1_at--632--3671Chr02:5033470..5033494 (25 bp)
CTTTCGTCCTCGGATGGTCATCACT
LOC_Os02g09760
OsAffx.2558.1.S1_at--47--10311Chr02:5033469..5033493 (25 bp)
TTTCGTCCTCGGATGGTCATCACTG
LOC_Os02g09760
OsAffx.2558.1.S1_at--226--10631Chr02:5033468..5033492 (25 bp)
TTCGTCCTCGGATGGTCATCACTGT
LOC_Os02g09760
OsAffx.2558.1.S1_at--666--9411Chr02:5033467..5033491 (25 bp)
TCGTCCTCGGATGGTCATCACTGTC
LOC_Os02g09760
OsAffx.2558.1.S1_at--209--4011Chr02:5033466..5033490 (25 bp)
CGTCCTCGGATGGTCATCACTGTCA
LOC_Os02g09760
Target Sequence 
GCTGCCAATGGCAAGAAAAGTCGATGAAATTGGAGACCATCTTCAGGCCAAGCTGGATAATCAAGCTAGCTCTGTCAGTG
TAACCAGAGCAACGGCGAAGGCTGAACATGATCATCAGGAGGCTGTCATGAGGAAATGCAAGAACGGGAGGAAGAACTGC
AAGAATTTCAGAACAAGAAAGCTTCCTGCAGATGCAGATGGCAAGATCCATTTCGATGGCCACATGCCATTCACTGCAGA
TTACCACTCAGTTCGTCGGCATCCTCCCAGTCACAACTAGGAGTTAATCTTAACACTACTAGTACCAGCTAGTTGCTTTG
CTTAGAAATATATATACAGTAATTAAGTAGCCTAATTTAATCAGTAGTGACAGTCCATATAGCTAAGCTGTAGTATCAAT
TCTTCTTTCCTTTCGTCCTCGGATGGTCATCACTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis