Browse Element(s) Details


OsAffx.15994.2.S1_at

Description tigr:9630.m00896
TID=OsAffx.15994.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0980011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15994.2.S1_at--486--5371Chr02:5056126..5056150 (25 bp)
GAAGACTGCAGGATATAGTTCTATT
LOC_Os02g09800
OsAffx.15994.2.S1_at--357--9591Chr02:5056253..5056277 (25 bp)
TCATTGGGTTATTCACCGCTTACAT
LOC_Os02g09800
OsAffx.15994.2.S1_at--218--131Chr02:5056263..5056287 (25 bp)
ATTCACCGCTTACATCACAGATAAC
LOC_Os02g09800
OsAffx.15994.2.S1_at--559--1431Chr02:5056312..5056336 (25 bp)
AGAACAAGCGCTGCTAGCACACAGT
LOC_Os02g09800
OsAffx.15994.2.S1_at--995--7631Chr02:5057199..5057222 (24 bp)
GGGAGCCTCAAGAAATCCATGTTTC
LOC_Os02g09800
OsAffx.15994.2.S1_at--754--2991Chr02:5057227..5057556 (25 bp)
AATGATCTTATCCAATTTTCAGAGT
LOC_Os02g09800
OsAffx.15994.2.S1_at--193--6651Chr02:5057555..5057579 (25 bp)
GTTGAACGGGCCAACTTTGGATATT
LOC_Os02g09800
OsAffx.15994.2.S1_at--656--491Chr02:5057585..5057609 (25 bp)
ATCGGCATTTGGCTTGTTGAGTCAG
LOC_Os02g09800
OsAffx.15994.2.S1_at--1013--7931Chr02:5057645..5057667 (23 bp)
GGATTTCAGCCAAAGCGCAGGTAAG
LOC_Os02g09800
OsAffx.15994.2.S1_at--670--10651Chr02:5057957..5057981 (25 bp)
TTCCCTATGCTTGCTTCATTGCTGA
LOC_Os02g09800
OsAffx.15994.2.S1_at--1097--3591Chr02:5057973..5057997 (25 bp)
CATTGCTGATTTTCTCCTATGGACA
LOC_Os02g09800
Target Sequence 
GAAGACTGCAGGATATAGTTCTATTACTGTGGCTGGGCAGGTGCACAAGTTTGTTGTTAGTGACAAATCACATCCACGGA
TATTGGAAATCATTGCAATGCTGGAGGAGATTTCACACAGGTTAAAGTCATTGGGTTATTCACCGCTTACATCACAGATA
ACAGTGGATGTGGATGAGGAAGAGAAAGAACAAGCGCTGCTAGCACACAGTGAGAAGCTGGCCATTGCTTTTGGCCTCAT
TAATCTAGCACCAAACTTGCCGGTTCATATCAGAAAGAATCTGAGGGAGCCTCAAGAAATCCATGTTTCTGAAAATGATC
TTATCCAATTTTCAGAGTTGAACGGGCCAACTTTGGATATTGAATCATCGGCATTTGGCTTGTTGAGTCAGCTTCCCCGA
AATTTCCTATTTTCAGACCTACCAGAGGATTTCAGCCAAAGCGCAGGTAAGGGGATCTGTCTTCCCTATGCTTGCTTCAT
TGCTGATTTTCTCCTATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15994.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis