Browse Element(s) Details


OsAffx.24178.1.S1_at

Description tigr:9630.m00895
TID=OsAffx.24178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0979011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24178.1.S1_at--177--10131Chr02:5049177..5049201 (25 bp)
TATGACTTGGTCATCAGCGCCAACG
LOC_Os02g09790
OsAffx.24178.1.S1_at--942--4551Chr02:5049161..5049185 (25 bp)
GCGCCAACGATCTGAATGAACCTCT
LOC_Os02g09790
OsAffx.24178.1.S1_at--802--5431Chr02:5049144..5049168 (25 bp)
GAACCTCTGGATTTTAATGCTTTCA
LOC_Os02g09790
OsAffx.24178.1.S1_at--43--5691Chr02:5049064..5049088 (25 bp)
GACATTCCGAAGACCAGTGTTCTGT
LOC_Os02g09790
OsAffx.24178.1.S1_at--334--3331Chr02:5048981..5049005 (25 bp)
CACTCCCATCAATATCATCAAGCGT
LOC_Os02g09790
OsAffx.24178.1.S1_at--407--6191Chr02:5048913..5048937 (25 bp)
GAGGACATAATTCTCCGTGCAGGAT
LOC_Os02g09790
OsAffx.24178.1.S1_at--932--7331Chr02:5048897..5048921 (25 bp)
GTGCAGGATGGTTTCCTCAGCTGAG
LOC_Os02g09790
OsAffx.24178.1.S1_at--1048--1591Chr02:5048879..5048903 (25 bp)
AGCTGAGGACTCTTTGGTTGGGAAA
LOC_Os02g09790
OsAffx.24178.1.S1_at--145--8511Chr02:5048804..5048828 (25 bp)
TGGAAGTGCTGCTTCTGCTGTCGCT
LOC_Os02g09790
OsAffx.24178.1.S1_at--911--2311Chr02:5048757..5048781 (25 bp)
AAAGGTTTGGAGCTTCTTGCATCCC
LOC_Os02g09790
OsAffx.24178.1.S1_at--633--4831Chr02:5048725..5048749 (25 bp)
GCTCAATGTCACGATGCAACACCAT
LOC_Os02g09790
Target Sequence 
TATGACTTGGTCATCAGCGCCAACGATCTGAATGAACCTCTGGATTTTAATGCTTTCAATCCTATATGTACAAAGCTAGA
GAAGCTCACAATCAGAGGATGCTGGGACAATGAGACATTCCGAAGACCAGTGTTCTGTGAGTATGGTGCAAATATCAAGT
ACCTGACACTGACATTTTGCAAAAATGACACCAATCCACTCCCATCAATATCATCAAGCGTGCCAAATCTGATATTTTTG
AGCATACGCAGGGGATGTTGGGCTGAGGACATAATTCTCCGTGCAGGATGGTTTCCTCAGCTGAGGACTCTTTGGTTGGG
AAAATTGGAGGAGTTGAGAAGGCTAGTCATTGAGGAAGGGGCCATTATTAGGCTGGAAGTGCTGCTTCTGCTGTCGCTCC
CATCCCTCAGGGAGGTTCCTAAAGGTTTGGAGCTTCTTGCATCCCTCAAGAAGCTCAATGTCACGATGCAACACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis