Browse Element(s) Details


OsAffx.11962.1.S1_at

Description tigr:9630.m00891
TID=OsAffx.11962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lycopene beta-cyclase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0975011/11Lycopene beta cyclase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0009765biological_processphotosynthesis, light harvesting
GO:0016117biological_processcarotenoid biosynthesis
GO:0016120biological_processcarotene biosynthesis
GO:0009507cellular_componentchloroplast
GO:0045435molecular_functionlycopene epsilon cyclase activity
GO:0045436molecular_functionlycopene beta cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11962.1.S1_at--867--8531Chr02:5029475..5029499 (25 bp)
TGGACGACATCCAGGAGCGCATGGC
LOC_Os02g09750
OsAffx.11962.1.S1_at--832--1851Chr02:5029472..5029496 (25 bp)
ACGACATCCAGGAGCGCATGGCGGC
LOC_Os02g09750
OsAffx.11962.1.S1_at--137--8331Chr02:5029445..5029469 (25 bp)
GGCTGCGCCACCTCGGGATACGCGT
LOC_Os02g09750
OsAffx.11962.1.S1_at--720--9431Chr02:5029433..5029457 (25 bp)
TCGGGATACGCGTCCGCGCCGTGGA
LOC_Os02g09750
OsAffx.11962.1.S1_at--724--6171Chr02:5029407..5029431 (25 bp)
GAGGACGAGCGGTGCGTCATCCCCA
LOC_Os02g09750
OsAffx.11962.1.S1_at--1160--1851Chr02:5029403..5029427 (25 bp)
ACGAGCGGTGCGTCATCCCCATGGG
LOC_Os02g09750
OsAffx.11962.1.S1_at--511--4251Chr02:5029314..5029338 (25 bp)
CCGTCCACGGGCTACATGGTGGCGC
LOC_Os02g09750
OsAffx.11962.1.S1_at--1040--8652Chr12:21540549..21541005 (25 bp)
TGTGGAGGGAGCTGTGGCCGGCGCA
NONE
OsAffx.11962.1.S1_at--41--6211Chr02:5029156..5029180 (25 bp)
GAGGCAGAGGGAGTTCTTCTGCTTC
LOC_Os02g09750
OsAffx.11962.1.S1_at--724--1331Chr02:5029151..5029175 (25 bp)
AGAGGGAGTTCTTCTGCTTCGGCAT
LOC_Os02g09750
OsAffx.11962.1.S1_at--660--4911Chr02:5029136..5029160 (25 bp)
GCTTCGGCATGGACATCCTCCTCAA
LOC_Os02g09750
Target Sequence 
TGGACGACATCCAGGAGCGCATGGCGGCGAGGCTGCGCCACCTCGGGATACGCGTCCGCGCCGTGGAGGAGGACGAGCGG
TGCGTCATCCCCATGGGCGGCCCGCTCCCGGTGCTCCCGCAGCGGGTCGTCGGCATCGGCGGCACCGCCGGGATGGTGCA
CCCGTCCACGGGCTACATGGTGGCGCGCACCCTCGCCACTGCGCCCATCGTGGCGGACGCCATCGTGCGCTTCCTCGACA
CCGGCAGCGGCGACAGCGCGTTCGCCGGCGACGCGCTGTCGGCGGAGGTGTGGAGGGAGCTGTGGCCGGCGCAGAGGAGG
AGGCAGAGGGAGTTCTTCTGCTTCGGCATGGACATCCTCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis