Browse Element(s) Details


Os.57154.1.S1_at

Description gb:AK111037.1
DB_XREF= gi:32996246
TID=Os.57154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A09, full insert sequence.
FL= gb:AK111037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57154.1.S1_at--798--9811Chr02:5045805..5045829 (25 bp)
TAACAGCCAGCTTTCTCTACTTGAG
LOC_Os02g09780
Os.57154.1.S1_at--649--4471Chr02:5045725..5045749 (25 bp)
GCCTGCGGGTTTTCGTAGAACAACT
LOC_Os02g09780
Os.57154.1.S1_at--1142--2331Chr02:5045686..5045710 (25 bp)
AAAGCTTTGGTGAGTATGTATCGCA
LOC_Os02g09780
Os.57154.1.S1_at--234--4051Chr02:5045653..5045677 (25 bp)
CGATAGACCAGCAGGTGACCGAGTT
LOC_Os02g09780
Os.57154.1.S1_at--1092--6191Chr02:5045627..5045651 (25 bp)
GAGGCAGTGGTGTCCATGCTTGATA
LOC_Os02g09780
Os.57154.1.S1_at--1116--8831Chr02:5045607..5045631 (25 bp)
TGATAAGCATGTTTCCCTCTTGGAA
LOC_Os02g09780
Os.57154.1.S1_at--682--2851Chr02:5045573..5045597 (25 bp)
AAGTCCGCATATAACATTGCTCCTA
LOC_Os02g09780
Os.57154.1.S1_at--585--9091Chr02:5045556..5045580 (25 bp)
TGCTCCTACCCAATGAATAATCGTT
LOC_Os02g09780
Os.57154.1.S1_at--981--9751Chr02:5045539..5045563 (25 bp)
TAATCGTTCCTCTCTGTATGTTTCA
LOC_Os02g09780
Os.57154.1.S1_at--973--7511Chr02:5045464..5045488 (25 bp)
GTGGATGAGAATTTGATGCCCGTTA
LOC_Os02g09780
Os.57154.1.S1_at--4--611Chr02:5045449..5045473 (25 bp)
ATGCCCGTTATCTCTGATGTTTCCA
LOC_Os02g09780
Target Sequence 
TAACAGCCAGCTTTCTCTACTTGAGAAAATGAATCGACGTGTAGCAGAGGAATACAATAACTATGGAGATGTTGCATCCG
GCCTGCGGGTTTTCGTAGAACAACTGAATGAGAAAAACCAAAGCTTTGGTGAGTATGTATCGCAGATTGATGCGATAGAC
CAGCAGGTGACCGAGTTTGAGGCAGTGGTGTCCATGCTTGATAAGCATGTTTCCCTCTTGGAAAAGAAAGTAAAGTCCGC
ATATAACATTGCTCCTACCCAATGAATAATCGTTCCTCTCTGTATGTTTCATTTTAATTTTTGTCATATGAGCTTATCTA
AGCGAGGTAGAAACCAAACCTGTGGATGAGAATTTGATGCCCGTTATCTCTGATGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis