Browse Element(s) Details


Os.20243.1.S1_at

Description gb:AU102087
DB_XREF= gi:9886194
DB_XREF=AU102087
CLONE=C10215
TID=Os.20243.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20243 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0984011/11calcium-binding EF hand family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein
LOC_Os02g09860NANA2+5090349..5091312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g09870NANA2+5094976..5098828retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20243.1.S1_at--375--5151Chr02:5071837..5071861 (25 bp)
GCAACTGTACTCGTGTTGATACATC
LOC_Os02g09840
Os.20243.1.S1_at--170--6851Chr02:5071798..5071822 (25 bp)
GTTTGCCGTGGAGGGCCAATCCAAA
LOC_Os02g09840
Os.20243.1.S1_at--391--8831Chr02:5071756..5071780 (25 bp)
TGATCTAGTTGCCAGTTTCGGTTCT
LOC_Os02g09840
Os.20243.1.S1_at--379--3451Chr02:5071744..5071768 (25 bp)
CAGTTTCGGTTCTTGATGCCTGTGA
LOC_Os02g09840
Os.20243.1.S1_at--76--5471Chr02:5071715..5071739 (25 bp)
GAACGGCAATTACATTCATGACATG
LOC_Os02g09840
Os.20243.1.S1_at--141--7971Chr02:5071691..5071715 (25 bp)
GGATCTGGCCTAGTTTTGCTGTTAA
LOC_Os02g09840
Os.20243.1.S1_at--865--5411Chr02:5071663..5071687 (25 bp)
GAAGCGCAAATCTACATCTACTTGT
LOC_Os02g09840
Os.20243.1.S1_at--715--5331Chr02:5071630..5071654 (25 bp)
GAAGTCATCATCCATAGTCAACTGA
LOC_Os02g09840
Os.20243.1.S1_at--164--8211Chr02:5071570..5071594 (25 bp)
GGAATCATCGTATGTTCAACTGTAC
LOC_Os02g09840
Os.20243.1.S1_at--397--9711Chr02:5071555..5071579 (25 bp)
TCAACTGTACATTGGCTGGAACCAC
LOC_Os02g09840
Os.20243.1.S1_at--322--1711Chr02:5071535..5071559 (25 bp)
ACCACAACTTTACTTTTTCTCATAG
LOC_Os02g09840
Target Sequence 
GCAACTGTACTCGTGTTGATACATCTAAAGTTTGAAATAGTTTGCCGTGGAGGGCCAATCCAAATCTAGAGACAAATACT
TTGATCTAGTTGCCAGTTTCGGTTCTTGATGCCTGTGAGTTTGAACGGCAATTACATTCATGACATGGATCTGGCCTAGT
TTTGCTGTTAAACCGAAGCGCAAATCTACATCTACTTGTGATATTCTGAAGTCATCATCCATAGTCAACTGACAAATAAG
AAAGTGCATGGGTTCTGATTGAGGGATGGAATCATCGTATGTTCAACTGTACATTGGCTGGAACCACAACTTTACTTTTT
CTCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis