Browse Element(s) Details


OsAffx.2558.1.S1_s_at

Description tigr:9630.m00892
TID=OsAffx.2558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0976010/11expressed protein
LOC_Os02g327401/11SNAP25 homologous protein SNAP30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09730OsAffx.24177.1.S1_at11/112+5014834..5017777hypothetical protein
LOC_Os02g09740Os.6254.1.S1_at11/112+5019762..5028025strubbelig receptor family 8, putative, expressed
LOC_Os02g09750OsAffx.11962.1.S1_at11/112+5028910..5030379Lycopene beta cyclase, chloroplast precursor, putative, expressed
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006944biological_processmembrane fusion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0016192biological_processvesicle-mediated transport
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005886cellular_componentplasma membrane
GO:0009504cellular_componentcell plate
GO:0005484molecular_functionSNAP receptor activity
GO:0005486molecular_functiont-SNARE activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2558.1.S1_s_at--2--4731NONE
GCTGGATAATCAAGCTAGCTCTGTC
NONE
OsAffx.2558.1.S1_s_at--241--2711Chr02:5033817..5033841 (25 bp)
AAGCTAGCTCTGTCAGTGTAACCAG
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--836--3231Chr02:5033790..5033814 (25 bp)
CAACGGCGAAGGCTGAACATGATCA
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--937--5171Chr02:5033679..5033703 (25 bp)
GCAAGATCCATTTCGATGGCCACAT
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--285--4412Chr06:11723951..11723971 (21 bp)
GCCACATGCCATTCACTGCAGATTA
NONE
OsAffx.2558.1.S1_s_at--643--6971Chr02:5033578..5033602 (25 bp)
GTACCAGCTAGTTGCTTTGCTTAGA
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--511--10071Chr02:5033515..5033539 (25 bp)
TAGTGACAGTCCATATAGCTAAGCT
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--962--4731Chr02:5033493..5033517 (25 bp)
GCTGTAGTATCAATTCTTCTTTCCT
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--1024--911Chr02:5033442..5033466 (25 bp)
AGGCTCTCAGCTTCCAGTTAGCATT
LOC_Os02g09760
OsAffx.2558.1.S1_s_at--854--6772Chr02:19439259..19439337 (25 bp)
GTTAGCATTGCATGGCTTTGCTCTT
LOC_Os02g32740
OsAffx.2558.1.S1_s_at--1051--3351Chr02:5033344..5033368 (25 bp)
CACCCTTGATGTTCCCTAATTTAAG
LOC_Os02g09760
Target Sequence 
GCTGGATAATCAAGCTAGCTCTGTCAGTGTAACCAGAGCAACGGCGAAGGCTGAACATGATCATCAGGAGGCTGTCATGA
GGAAATGCAAGAACGGGAGGAAGAACTGCAAGAATTTCAGAACAAGAAAGCTTCCTGCAGATGCAGATGGCAAGATCCAT
TTCGATGGCCACATGCCATTCACTGCAGATTACCACTCAGTTCGTCGGCATCCTCCCAGTCACAACTAGGAGTTAATCTT
AACACTACTAGTACCAGCTAGTTGCTTTGCTTAGAAATATATATACAGTAATTAAGTAGCCTAATTTAATCAGTAGTGAC
AGTCCATATAGCTAAGCTGTAGTATCAATTCTTCTTTCCTTTCGTCCTCGGATGGTCATCACTGTCAGGCTCTCAGCTTC
CAGTTAGCATTGCATGGCTTTGCTCTTTGCTTTGCTGACATTTTTGTTAGTTAGCAAGAGTAGCTCACAGTGATGGCATG
TCACCACCCTTGATGTTCCCTAATTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2558.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis