Browse Element(s) Details


Os.4883.1.S1_at

Description gb:AK111066.1
DB_XREF= gi:32996275
TID=Os.4883.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E01, full insert sequence.
FL= gb:AK111066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0960010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed
LOC_Os02g09600Os.4883.1.S1_at10/112+4938727..4942072expressed protein
LOC_Os02g09610Os.55688.1.S1_at11/112+4942759..4944252GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g09620Os.51107.1.S1_at11/112+4944685..4948383GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g09630Os.5025.1.S1_at11/112+4949549..4952480Nitrate-induced NOI protein, expressed
LOC_Os02g09640OsAffx.24175.1.S1_at11/112+4954135..4955518hypothetical protein
LOC_Os02g09650NANA2+4958924..4959614AP2 domain containing protein, expressed
LOC_Os02g09660OsAffx.2554.1.S1_at11/112+4965201..4965467expressed protein
LOC_Os02g09670Os.50301.1.S1_at11/112+4966917..4973612expressed protein
LOC_Os02g09670Os.57116.1.S1_at10/112+4966917..4973612expressed protein
LOC_Os02g09670OsAffx.26564.3.S1_at10/112+4966917..4973612expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4883.1.S1_at--634--6191Chr02:4940022..4940046 (25 bp)
GAGGAATGTTCTACTACTAGTTAAT
LOC_Os02g09600
Os.4883.1.S1_at--239--9951NONE
TACCTACCTACTGGTTTACAGTGGC
NONE
Os.4883.1.S1_at--1082--8232Chr02:30333787..30333812 (25 bp)
GGCACAAGTGTGACTGAGCGGTTTA
NONE
Os.4883.1.S1_at--36--5731Chr02:4938992..4939016 (25 bp)
GACTGAGCGGTTTACAAAGGAACAT
LOC_Os02g09600
Os.4883.1.S1_at--429--2111Chr02:4938971..4938995 (25 bp)
ACATGAGTGTCGGTGTAGCCAGCTT
LOC_Os02g09600
Os.4883.1.S1_at--1155--7431Chr02:4938959..4938983 (25 bp)
GTGTAGCCAGCTTGCAAATGCACAA
LOC_Os02g09600
Os.4883.1.S1_at--91--10491Chr02:4938897..4938921 (25 bp)
TTACAGTGCTTTGGTTTAGGTGGTT
LOC_Os02g09600
Os.4883.1.S1_at--182--10311Chr02:4938883..4938907 (25 bp)
TTTAGGTGGTTGCACAGTGATAAAC
LOC_Os02g09600
Os.4883.1.S1_at--12--2831Chr02:4938855..4938879 (25 bp)
AAGTAACCACTTCAGTCTTGCAGAA
LOC_Os02g09600
Os.4883.1.S1_at--501--3451Chr02:4938843..4938867 (25 bp)
CAGTCTTGCAGAAGGTTTACAGGGC
LOC_Os02g09600
Os.4883.1.S1_at--265--4931Chr02:4938802..4938826 (25 bp)
GCTTGCTAGTACTCGTATGAAATGA
LOC_Os02g09600
Target Sequence 
GAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTGTGACTGAG
CGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTA
CCTTCNGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTT
TACAGGGCNNNNNNTNANNTGNNTGCNNNNTNNTANNCNNNNNNNANNNANNNNANNNTTNCANANNCTNNNNTGNNNGC
TTGCTAGTACTCGTATGAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis