Browse Element(s) Details


OsAffx.11958.1.S1_s_at

Description tigr:9630.m00870
TID=OsAffx.11958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0954011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g09520OsAffx.11957.1.S1_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09520OsAffx.11957.1.S1_x_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09530Os.54110.1.S1_at11/112+4908955..4911331expressed protein
LOC_Os02g09540OsAffx.11958.1.S1_s_at11/112+4913033..4913439expressed protein
LOC_Os02g09550NANA2+4915505..4921468retrotransposon protein, putative, unclassified
LOC_Os02g09560Os.28943.1.S1_x_at2/112+4922092..4925025retrotransposon protein, putative, unclassified
LOC_Os02g09569Os.21387.3.S1_x_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09569Os.21387.3.S1_at1/112+4926922..4928035hypothetical protein
LOC_Os02g09580OsAffx.2553.1.S1_at11/112+4931298..4935969F-box domain containing protein
LOC_Os02g09590Os.6830.1.S1_at10/112+4936445..4937796ribosomal protein S21 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11958.1.S1_s_at--783--9411Chr02:4913304..4913328 (25 bp)
TCGTGGCGTGCGCGATCGCCGTCCG
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--299--8251Chr02:4913193..4913217 (25 bp)
GGCACGGGTGCAACCCGCTCAAGGA
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--735--7711Chr02:4913188..4913212 (25 bp)
GGGTGCAACCCGCTCAAGGACAAGA
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--518--9731Chr02:4913175..4913199 (25 bp)
TCAAGGACAAGACGTGCCGGCACGA
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--495--3211Chr02:4913174..4913198 (25 bp)
CAAGGACAAGACGTGCCGGCACGAC
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--250--2911Chr02:4913173..4913197 (25 bp)
AAGGACAAGACGTGCCGGCACGACG
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--729--951Chr02:4913172..4913196 (25 bp)
AGGACAAGACGTGCCGGCACGACGA
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--554--1851Chr02:4913154..4913178 (25 bp)
ACGACGACCGCCACGATCCGGAGAA
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--762--5811Chr02:4913149..4913173 (25 bp)
GACCGCCACGATCCGGAGAACCAGG
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--948--4151Chr02:4913146..4913170 (25 bp)
CGCCACGATCCGGAGAACCAGGAGG
LOC_Os02g09540
OsAffx.11958.1.S1_s_at--288--4411Chr02:4913145..4913169 (25 bp)
GCCACGATCCGGAGAACCAGGAGGA
LOC_Os02g09540
Target Sequence 
TCGTGGCGTGCGCGATCGCCGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCCGACGAGGAGGAC
GCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCGCTCAAGGACAAGACGTGCCGGCACGACGACCG
CCACGATCCGGAGAACCAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11958.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis