Browse Element(s) Details


Os.12550.1.S1_s_at

Description gb:AK105236.1
DB_XREF= gi:32990445
TID=Os.12550.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A01, full insert sequence.
FL= gb:AK105236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0951011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed
LOC_Os02g09500OsAffx.2552.1.S1_at11/112+4879066..4879437hypothetical protein
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g09520OsAffx.11957.1.S1_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09520OsAffx.11957.1.S1_x_at11/112+4906979..4907296hypothetical protein
LOC_Os02g09530Os.54110.1.S1_at11/112+4908955..4911331expressed protein
LOC_Os02g09540OsAffx.11958.1.S1_s_at11/112+4913033..4913439expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
GO:0047215molecular_functionindole-3-acetate beta-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12550.1.S1_s_at--953--3731Chr02:4888709..4888733 (25 bp)
CTAAGGCGTGACGTCACGCATGGAA
LOC_Os02g09510
Os.12550.1.S1_s_at--600--3991Chr02:4888703..4888727 (25 bp)
CGTGACGTCACGCATGGAATCATAA
LOC_Os02g09510
Os.12550.1.S1_s_at--1074--5751Chr02:4888700..4888724 (25 bp)
GACGTCACGCATGGAATCATAAATC
LOC_Os02g09510
Os.12550.1.S1_s_at--291--5011Chr02:4888692..4888716 (25 bp)
GCATGGAATCATAAATCGCAGCGTT
LOC_Os02g09510
Os.12550.1.S1_s_at--595--8211Chr02:4888688..4888712 (25 bp)
GGAATCATAAATCGCAGCGTTTAGT
LOC_Os02g09510
Os.12550.1.S1_s_at--800--2251Chr02:4888680..4888704 (25 bp)
AAATCGCAGCGTTTAGTTATTAAGT
LOC_Os02g09510
Os.12550.1.S1_s_at--454--10031Chr02:4888667..4888691 (25 bp)
TAGTTATTAAGTAAGCGGCAGGGAC
LOC_Os02g09510
Os.12550.1.S1_s_at--974--7051Chr02:4888657..4888681 (25 bp)
GTAAGCGGCAGGGACAGATTTAATT
LOC_Os02g09510
Os.12550.1.S1_s_at--6--4691Chr02:4888653..4888677 (25 bp)
GCGGCAGGGACAGATTTAATTAATT
LOC_Os02g09510
Os.12550.1.S1_s_at--863--10612Chr02:4888623..4888647 (25 bp)
TTCGTACAAGTATTTTGCCACCGGT
LOC_Os02g09510
Os.12550.1.S1_s_at--226--9852Chr02:4888619..4888643 (25 bp)
TACAAGTATTTTGCCACCGGTTTGA
LOC_Os02g09510
Target Sequence 
CTAAGGCGTGACGTCACGCATGGAATCATAAATCGCAGCGTTTAGTTATTAAGTAAGCGGCAGGGACAGATTTAATTAAT
TGCTACTTCGTACAAGTATTTTGCCACCGGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12550.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis