Browse Element(s) Details


OsAffx.2552.1.S1_at

Description tigr:9630.m00865
TID=OsAffx.2552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0950011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed
LOC_Os02g09500OsAffx.2552.1.S1_at11/112+4879066..4879437hypothetical protein
LOC_Os02g09510Os.12550.1.S1_s_at11/112+4888510..4890156UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2552.1.S1_at--190--6051Chr02:4879383..4879407 (25 bp)
GAGATCTTCTCAGAGACCACAACCA
LOC_Os02g09500
OsAffx.2552.1.S1_at--898--1371Chr02:4879370..4879394 (25 bp)
AGACCACAACCAACTCACAGGAGAT
LOC_Os02g09500
OsAffx.2552.1.S1_at--99--6051Chr02:4879350..4879374 (25 bp)
GAGATCACAGCGGAGGCCAACAAGC
LOC_Os02g09500
OsAffx.2552.1.S1_at--356--8011Chr02:4879339..4879363 (25 bp)
GGAGGCCAACAAGCAGGCTGACCTC
LOC_Os02g09500
OsAffx.2552.1.S1_at--519--911Chr02:4879325..4879349 (25 bp)
AGGCTGACCTCCTAGTCAACCAAAT
LOC_Os02g09500
OsAffx.2552.1.S1_at--1148--10051Chr02:4879313..4879337 (25 bp)
TAGTCAACCAAATCAAGCACCTCAC
LOC_Os02g09500
OsAffx.2552.1.S1_at--555--1391Chr02:4879222..4879246 (25 bp)
AGACGCCGCAAAGCTCGAGCACTAT
LOC_Os02g09500
OsAffx.2552.1.S1_at--645--2351Chr02:4879213..4879237 (25 bp)
AAAGCTCGAGCACTATGGCATCATC
LOC_Os02g09500
OsAffx.2552.1.S1_at--583--2031Chr02:4879202..4879226 (25 bp)
ACTATGGCATCATCGAAGACCTCCG
LOC_Os02g09500
OsAffx.2552.1.S1_at--707--9731Chr02:4879169..4879193 (25 bp)
TCAAGGGCATGACTACGCTACCGAC
LOC_Os02g09500
OsAffx.2552.1.S1_at--395--1151Chr02:4879098..4879122 (25 bp)
AGTCGCCACCGCTTGCACTCTGTGG
LOC_Os02g09500
Target Sequence 
GAGATCTTCTCAGAGACCACAACCAACTCACAGGAGATCACAGCGGAGGCCAACAAGCAGGCTGACCTCCTAGTCAACCA
AATCAAGCACCTCACTACCGACCTCCCCGTCCCCTCCATCCCTGCGATCCCACATATCCCCTCCGCCGTCACGCCGAAGC
CAGACGCCGCAAAGCTCGAGCACTATGGCATCATCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTACGCTACCGACA
CCCTCCTCCCGCGTCAACGCCGACAACCTTCTCCATGCTACCGCCAGTCGCCACCGCTTGCACTCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis