Browse Element(s) Details


Os.54569.1.S1_x_at

Description gb:AK105817.1
DB_XREF= gi:32991026
TID=Os.54569.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C12, full insert sequence.
FL= gb:AK105817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4309011/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g094801/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g43100OsAffx.15905.1.S1_at11/116+25905847..25906324hypothetical protein
LOC_Os06g43110NANA6+25907671..25908804retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54569.1.S1_x_at--271--3951Chr06:25899047..25899071 (25 bp)
CGGCAGGAGGAGGATCCCTTCACCT
LOC_Os06g43090
Os.54569.1.S1_x_at--165--8531Chr06:25899003..25899027 (25 bp)
TGGGACGGATCAGCGGTTCAACCAC
LOC_Os06g43090
Os.54569.1.S1_x_at--852--10632Chr02:4868411..4868493 (25 bp)
TTCGCCGCCGCGATGCAGGAGATGA
LOC_Os02g09480
Os.54569.1.S1_x_at--1076--9291Chr06:25898845..25898869 (25 bp)
TCCGCGCCGAGGTGCACAAGTACAT
LOC_Os06g43090
Os.54569.1.S1_x_at--1157--2831Chr06:25898828..25898852 (25 bp)
AAGTACATGGCGAGCGTCGGCGTCC
LOC_Os06g43090
Os.54569.1.S1_x_at--366--6331Chr06:25898712..25898736 (25 bp)
GATGCACTGATCAAAAACCTAGCGT
LOC_Os06g43090
Os.54569.1.S1_x_at--519--2631Chr06:25898697..25898721 (25 bp)
AACCTAGCGTCCATTAGAATCTCTA
LOC_Os06g43090
Os.54569.1.S1_x_at--1082--5231Chr06:25898681..25898705 (25 bp)
GAATCTCTACTATCGTTTCAACTTT
LOC_Os06g43090
Os.54569.1.S1_x_at--533--211Chr06:25898642..25898666 (25 bp)
ATTTGTTTCCAAAACTGCTGTGAAA
LOC_Os06g43090
Os.54569.1.S1_x_at--865--7331Chr06:25898623..25898647 (25 bp)
GTGAAAACCGAAACAGCAGTCCGAA
LOC_Os06g43090
Os.54569.1.S1_x_at--639--2431Chr06:25898530..25898554 (25 bp)
AAAAGCTCGGCTACCTATGTACAGG
LOC_Os06g43090
Target Sequence 
CGGCAGGAGGAGGATCCCTTCACCTCGCTCTCCCTCTCGCTCCCTGGGACGGATCAGCGGTTCAACCACGACAGCGCCCA
CAGCCACTTCCAAGAACTCCCGTCCTCCCCCTCGCCGCCACCACCACCTCCCCCCGCCGCCGCCGCCTCGACGACACAGT
ACCCGTTCACCCCGGAGTTCGCCGCCGCGATGCAGGAGATGATCCGCGCCGAGGTGCACAAGTACATGGCGAGCGTCGGC
GTCCGCGCCGGGTGCGGCGACGCCGGCGGTGCCGACCTCCACATGCCGCAGCTGGTGGAGGGCGTCATGCGCGCCGCCGC
GGAGCGCGTCGGGAGGATGCACTGATCAAAAACCTAGCGTCCATTAGAATCTCTACTATCGTTTCAACTTTTTTTTTCCT
TAAAAATTTGTTTCCAAAACTGCTGTGAAAACCGAAACAGCAGTCCGAAACGGAAGAACCAAAAAAAAATGCGAGGAGAG
ATGGGAAAGAAATGTTTCGAGCTACGAAAAAAAACCGAAAAGCTCGGCTACCTATGTACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis