Browse Element(s) Details


OsAffx.15905.1.S1_at

Description tigr:9634.m04160
TID=OsAffx.15905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g43100OsAffx.15905.1.S1_at11/116+25905847..25906324hypothetical protein
LOC_Os06g43110NANA6+25907671..25908804retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein
LOC_Os06g43130Os.51825.1.S1_at11/116+25927040..25929626expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15905.1.S1_at--882--4151Chr06:25906223..25906247 (25 bp)
CGCGCCTCTCATGCATAGTGGAAAA
LOC_Os06g43100
OsAffx.15905.1.S1_at--557--4851Chr06:25906211..25906235 (25 bp)
GCATAGTGGAAAAACCCGGACTGGA
LOC_Os06g43100
OsAffx.15905.1.S1_at--996--5671Chr06:25906075..25906217 (25 bp)
GACTGGAGGTCGACCCGTTTTTGAT
LOC_Os06g43100
OsAffx.15905.1.S1_at--188--7811Chr06:25906068..25906210 (25 bp)
GGTCGACCCGTTTTTGATATGATAT
LOC_Os06g43100
OsAffx.15905.1.S1_at--425--4991Chr06:25906040..25906064 (25 bp)
GCATGAATATTGACTTATCCAAAGT
LOC_Os06g43100
OsAffx.15905.1.S1_at--660--5351Chr06:25905986..25906010 (25 bp)
GAAGATCATATGCATCTAATTCTAA
LOC_Os06g43100
OsAffx.15905.1.S1_at--67--3751Chr06:25905971..25905995 (25 bp)
CTAATTCTAATATATCTCTGATGCA
LOC_Os06g43100
OsAffx.15905.1.S1_at--463--8791Chr06:25905941..25905965 (25 bp)
TGTTGAGCCAAAATTCCCCATTGTC
LOC_Os06g43100
OsAffx.15905.1.S1_at--101--4291Chr06:25905935..25905959 (25 bp)
GCCAAAATTCCCCATTGTCAACGAA
LOC_Os06g43100
OsAffx.15905.1.S1_at--829--10651Chr06:25905928..25905952 (25 bp)
TTCCCCATTGTCAACGAATAGATCA
LOC_Os06g43100
OsAffx.15905.1.S1_at--465--6451Chr06:25905908..25905932 (25 bp)
GATCAAAGGTGATTTCCAACCAGGG
LOC_Os06g43100
Target Sequence 
CGCGCCTCTCATGCATAGTGGAAAAACCCGGACTGGAGGTCGACCCGTTTTTGATATGATATATAGCATGAATATTGACT
TATCCAAAGTTTGCAAAGAACAGATTAAAACTGACAACCGAAGATCATATGCATCTAATTCTAATATATCTCTGATGCAA
CTTCTGTTGAGCCAAAATTCCCCATTGTCAACGAATAGATCAAAGGTGATTTCCAACCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis