Browse Element(s) Details


Os.51825.1.S1_at

Description gb:AK073270.1
DB_XREF= gi:32983293
TID=Os.51825.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027A18, full insert sequence.
FL= gb:AK063888.1 gb:AK073270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4313011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43100OsAffx.15905.1.S1_at11/116+25905847..25906324hypothetical protein
LOC_Os06g43110NANA6+25907671..25908804retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein
LOC_Os06g43130Os.51825.1.S1_at11/116+25927040..25929626expressed protein
LOC_Os06g43140Os.50917.1.S1_at10/116+25931445..25933934expressed protein
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51825.1.S1_at--359--7871Chr06:25927734..25927758 (25 bp)
GGTATTGTGCTCAATGTTCTTGGAA
LOC_Os06g43130
Os.51825.1.S1_at--354--5291Chr06:25927712..25927736 (25 bp)
GAATGGGTGCTGCAATTCTTGGTAT
LOC_Os06g43130
Os.51825.1.S1_at--583--3151Chr06:25927699..25927723 (25 bp)
AATTCTTGGTATGCAGGCAACTGTA
LOC_Os06g43130
Os.51825.1.S1_at--858--4931Chr06:25927671..25927695 (25 bp)
GCATTGGTAGCAAAAGCCCTCACTA
LOC_Os06g43130
Os.51825.1.S1_at--284--2431Chr06:25927660..25927684 (25 bp)
AAAAGCCCTCACTACATCTGCAGTG
LOC_Os06g43130
Os.51825.1.S1_at--479--3471Chr06:25927626..25927650 (25 bp)
CAGGGAATATCTCCTGGCCAGAGCC
LOC_Os06g43130
Os.51825.1.S1_at--967--8451Chr06:25927612..25927636 (25 bp)
TGGCCAGAGCCCTGTTCTATCTTTA
LOC_Os06g43130
Os.51825.1.S1_at--382--5871Chr06:25927606..25927630 (25 bp)
GAGCCCTGTTCTATCTTTAGATGTT
LOC_Os06g43130
Os.51825.1.S1_at--295--2871Chr06:25927095..25927119 (25 bp)
AAGTGAGCAAGTTTCGTGATTCCTA
LOC_Os06g43130
Os.51825.1.S1_at--976--3991Chr06:25927081..25927105 (25 bp)
CGTGATTCCTATGATGTGCGGTGCT
LOC_Os06g43130
Os.51825.1.S1_at--482--6271Chr06:25927069..25927093 (25 bp)
GATGTGCGGTGCTGCTTCATTGCTG
LOC_Os06g43130
Target Sequence 
GGTATTGTGCTCAATGTTCTTGGAATGGGTGCTGCAATTCTTGGTATGCAGGCAACTGTAGGGGCATTGGTAGCAAAAGC
CCTCACTACATCTGCAGTGCCGTACTACCAGGGAATATCTCCTGGCCAGAGCCCTGTTCTATCTTTAGATGTTTTCCTTG
TTCAGGCTTCAGCCAACACGATCCTCTCACATTTTCTTGGATTATCGAGCACACTGGAATTACTGCGATCTGTAACCCTG
ACAAAAGTAGAAGCTGCCTCAACCCCTCGATCTCAGCCAGCATGAGCTTAAGCTTTCCAGAGTCCAGACCAATGTTCCTC
CGTTCTTTCTTTGGTTGTATTTTTCTCTGCAATTGCTTTGTGTTTTCTTAAAATTTTCTTTTAGTGATAAGCTTCGATCA
GTCTAGTTGCGTTGCCTTTGCTGAGTGCAGATTTGAAGGACGCATTCAAATCTGCTCGTCTTTCTTANTACCTTTGTTTA
TTTCTGAGCATATTAGAAGNTTCTGTGAGAAGTGAGCAAGTTTCGTGATTCCTATGATGTGCGGTGCTGCTTCATTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis