Browse Element(s) Details


OsAffx.5088.1.S1_at

Description tigr:9634.m04162
TID=OsAffx.5088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=streptococcal hemagglutinin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4312011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g43100OsAffx.15905.1.S1_at11/116+25905847..25906324hypothetical protein
LOC_Os06g43110NANA6+25907671..25908804retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein
LOC_Os06g43130Os.51825.1.S1_at11/116+25927040..25929626expressed protein
LOC_Os06g43140Os.50917.1.S1_at10/116+25931445..25933934expressed protein
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5088.1.S1_at--641--7571Chr06:25923340..25923364 (25 bp)
GGGCGTTTCTCTCATGTGTGGACAC
LOC_Os06g43120
OsAffx.5088.1.S1_at--381--8651Chr06:25923356..25923380 (25 bp)
TGTGGACACTCAATGGGCAACAGCC
LOC_Os06g43120
OsAffx.5088.1.S1_at--1065--6931Chr06:25923404..25923428 (25 bp)
GTAGTCATATGAATGCCTTCCCACG
LOC_Os06g43120
OsAffx.5088.1.S1_at--1137--771Chr06:25923488..25923512 (25 bp)
ATGTGAGCTCCATACGAATTGTCAG
LOC_Os06g43120
OsAffx.5088.1.S1_at--259--8731Chr06:25923651..25923675 (25 bp)
TGTCTCAACTGATGGGTTCTCTCTA
LOC_Os06g43120
OsAffx.5088.1.S1_at--113--6731Chr06:25923666..25923690 (25 bp)
GTTCTCTCTACGGAAATCTGGTGTG
LOC_Os06g43120
OsAffx.5088.1.S1_at--1077--9711Chr06:25923721..25923745 (25 bp)
TCAAGATCCCTTGAGAAGCGTTCTC
LOC_Os06g43120
OsAffx.5088.1.S1_at--404--6691Chr06:25923784..25923808 (25 bp)
GTTCCTAATTTCTTGTTCAGTCATC
LOC_Os06g43120
OsAffx.5088.1.S1_at--281--10031Chr06:25923861..25923885 (25 bp)
TAGAAGTTTCCAGCTCAGGTTGTGC
LOC_Os06g43120
OsAffx.5088.1.S1_at--55--9951Chr06:25923917..25923941 (25 bp)
TACGATTTTAACACTCTTTCACTGG
LOC_Os06g43120
OsAffx.5088.1.S1_at--374--6291Chr06:25923967..25923991 (25 bp)
GATGTTGCAATGAATGCCCACCTTA
LOC_Os06g43120
Target Sequence 
GGGCGTTTCTCTCATGTGTGGACACTCAATGGGCAACAGCCACAGAGGAAAGGTTTTATGGGCAGTAGTCATATGAATGC
CTTCCCACGTATACTTCCATGGAAAAGAAAAATATTCTGCAAGAATTTTAGAAGCAGTCACATGTCGAATGTGAGCTCCA
TACGAATTGTCAGAAAATTGCTGCAAACAAGGAAGAGAGATATGATTTATACTGTCTCAACTGATGGGTTCTCTCTACGG
AAATCTGGTGTGTTAAGTGTTGGTGGATCAAGTTTGAAATGGTCAAGATCCCTTGAGAAGCGTTCTCAAAAGGTCAACAA
GGTATTTCACTTCAGTGAAATTTTTGTTCCTAATTTCTTGTTCAGTCATCAACAGAAATGATTCCAGGAGTTCTATAATT
CTATTCATCTGATCATGATATCTAGAAGTTTCCAGCTCAGGTTGTGCTGGGTATACACTTGAGTTATTAGAACAACTATA
CGATTTTAACACTCTTTCACTGGTTAAACTGTAAGCTCTAAAGACAGGGATGTTGCAATGAATGCCCACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis