Browse Element(s) Details

OsAffx.15903.1.S1_at

Description

tigr:9634.m04154
TID=OsAffx.15903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=APG isolog protein, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g43044	11/11	GDSL-like Lipase/Acylhydrolase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g43010	NA	NA	6	+	25851027..25851320	hypothetical protein
LOC_Os06g43020	OsAffx.15902.1.S1_at	10/11	6	+	25856439..25862971	expressed protein
LOC_Os06g43030	Os.50002.1.S1_at	11/11	6	+	25866750..25869522	protein kinase, putative, expressed
LOC_Os06g43044	OsAffx.15903.1.S1_at	11/11	6	+	25869227..25875331	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044	OsAffx.15903.1.S1_s_at	11/11	6	+	25869227..25875331	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044	Os.50788.1.A1_at	10/11	6	+	25869227..25875331	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044	Os.8847.1.S1_at	1/11	6	+	25869227..25875331	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044	Os.50043.1.A1_at	1/11	6	+	25869227..25875331	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060	OsAffx.28071.1.S1_at	11/11	6	+	25879284..25879841	expressed protein
LOC_Os06g43070	OsAffx.5087.1.S1_at	11/11	6	+	25882988..25883281	hypothetical protein
LOC_Os06g43080	NA	NA	6	+	25895002..25895280	hypothetical protein
LOC_Os06g43090	Os.54569.1.S1_x_at	11/11	6	+	25898447..25899816	Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016298	molecular_function	lipase activity
GO:0016789	molecular_function	carboxylic ester hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15903.1.S1_at--1119--1083	1	Chr06:25870048..25870072 (25 bp)	TTGGTGAGCTATATATATTTGGCGC	LOC_Os06g43044
OsAffx.15903.1.S1_at--690--369	1	Chr06:25870040..25870064 (25 bp)	CTATATATATTTGGCGCTGTTCTTT	LOC_Os06g43044
OsAffx.15903.1.S1_at--68--1021	1	Chr06:25870033..25870057 (25 bp)	TATTTGGCGCTGTTCTTTTCAGCTT	LOC_Os06g43044
OsAffx.15903.1.S1_at--1010--1023	1	Chr06:25870031..25870055 (25 bp)	TTTGGCGCTGTTCTTTTCAGCTTCT	LOC_Os06g43044
OsAffx.15903.1.S1_at--952--363	1	Chr06:25870011..25870035 (25 bp)	CTTCTTCACCGGATTATTATCGCAG	LOC_Os06g43044
OsAffx.15903.1.S1_at--759--365	1	Chr06:25870008..25870032 (25 bp)	CTTCACCGGATTATTATCGCAGATT	LOC_Os06g43044
OsAffx.15903.1.S1_at--305--53	1	Chr06:25869993..25870017 (25 bp)	ATCGCAGATTATTTGTTTCACGTAC	LOC_Os06g43044
OsAffx.15903.1.S1_at--386--653	1	Chr06:25869988..25870011 (24 bp)	GATTATTTGTTTCACGTACGCTGGG	LOC_Os06g43044
OsAffx.15903.1.S1_at--377--1041	1	Chr06:25869988..25870009 (22 bp)	TTATTTGTTTCACGTACGCTGGGCT	LOC_Os06g43044
OsAffx.15903.1.S1_at--762--1025	1	Chr06:25869646..25870006 (25 bp)	TTTGTTTCACGTACGCTGGGCTGGA	LOC_Os06g43044
OsAffx.15903.1.S1_at--283--1023	1	Chr06:25869642..25870002 (25 bp)	TTTCACGTACGCTGGGCTGGAGAAC	LOC_Os06g43044

Target Sequence

TTGGTGAGCTATATATATTTGGCGCTGTTCTTTTCAGCTTCTTCACCGGATTATTATCGCAGATTATTTGTTTCACGTAC
GCTGGGCTGGAGAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis