Browse Element(s) Details


Os.50002.1.S1_at

Description gb:AK119586.1
DB_XREF= gi:37989209
TID=Os.50002.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C10, full insert sequence.
FL= gb:AK119586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4303011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein
LOC_Os06g43030Os.50002.1.S1_at11/116+25866750..25869522protein kinase, putative, expressed
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50002.1.S1_at--899--4051Chr06:25868407..25868827 (25 bp)
CGAGAAGAATCTGCGGCCGCCGTTG
LOC_Os06g43030
Os.50002.1.S1_at--881--3791Chr06:25868841..25868865 (25 bp)
CTCCGGTGCTGAACAACCTGATCAA
LOC_Os06g43030
Os.50002.1.S1_at--926--1211Chr06:25868901..25868925 (25 bp)
AGTTCAGCTACATCGTGTCGGTGCT
LOC_Os06g43030
Os.50002.1.S1_at--1162--5311Chr06:25868929..25868953 (25 bp)
GAAGTACGACCACTGCGTGAAGGAA
LOC_Os06g43030
Os.50002.1.S1_at--150--2891Chr06:25868952..25868976 (25 bp)
AAGGGATGCCGATCATGGCGCACCA
LOC_Os06g43030
Os.50002.1.S1_at--1085--991Chr06:25868984..25869008 (25 bp)
AGGATCTGGAGCTCCTTCGCCAAGA
LOC_Os06g43030
Os.50002.1.S1_at--761--791Chr06:25869017..25869041 (25 bp)
ATGGGCTGCATCACCAACAACTTGT
LOC_Os06g43030
Os.50002.1.S1_at--1025--2451Chr06:25869032..25869056 (25 bp)
AACAACTTGTCCATACCGGTGCATG
LOC_Os06g43030
Os.50002.1.S1_at--688--4251Chr06:25869047..25869071 (25 bp)
CCGGTGCATGCTTGATTCGATCAAA
LOC_Os06g43030
Os.50002.1.S1_at--346--3531Chr06:25869150..25869174 (25 bp)
CATGCTGATGTAACCTTGCTACTCA
LOC_Os06g43030
Os.50002.1.S1_at--318--1391Chr06:25869175..25869199 (25 bp)
AGACCTCTGTTTGTGCTTTGCATGA
LOC_Os06g43030
Target Sequence 
CGAGAAGAATCTGCGGCCGCCGTTGTCGACCTCGTGCTCTCCGGTGCTGAACAACCTGATCAAGAGGTGCTGGTCGGCGA
ACCCGGCGAGGCGGCCGGAGTTCAGCTACATCGTGTCGGTGCTGGAGAAGTACGACCACTGCGTGAAGGAAGGGATGCCG
ATCATGGCGCACCAGGAGCTCAGGATCTGGAGCTCCTTCGCCAAGATCTTCAGGATGGGCTGCATCACCAACAACTTGTC
CATACCGGTGCATGCTTGATTCGATCAAAATACTCACCATACGTATATACTGGAGTAGTATTAATTATACATGTATGTTG
AATTAATCTCTGATTAAGATAAACACACATGCTGATGTAACCTTGCTACTCAAGACCTCTGTTTGTGCTTTGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis