Browse Element(s) Details


OsAffx.28071.1.S1_at

Description tigr:9634.m04156
TID=OsAffx.28071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein
LOC_Os06g43030Os.50002.1.S1_at11/116+25866750..25869522protein kinase, putative, expressed
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28071.1.S1_at--98--9031Chr06:25879474..25879498 (25 bp)
TGCACGACCCGGAGAACTCGGAGGA
LOC_Os06g43060
OsAffx.28071.1.S1_at--989--7251Chr06:25879602..25879626 (25 bp)
GTCCTCGGCCACTGAATTGAACGGC
LOC_Os06g43060
OsAffx.28071.1.S1_at--174--3331Chr06:25879611..25879635 (25 bp)
CACTGAATTGAACGGCGTGTGGTTT
LOC_Os06g43060
OsAffx.28071.1.S1_at--79--6631Chr06:25879637..25879661 (25 bp)
GTTGTGATCGATCGACTGATCGGCA
LOC_Os06g43060
OsAffx.28071.1.S1_at--725--4031Chr06:25879645..25879669 (25 bp)
CGATCGACTGATCGGCAATGGATCT
LOC_Os06g43060
OsAffx.28071.1.S1_at--212--3951Chr06:25879657..25879681 (25 bp)
CGGCAATGGATCTCATCGGCTGGGT
LOC_Os06g43060
OsAffx.28071.1.S1_at--998--9591Chr06:25879669..25879693 (25 bp)
TCATCGGCTGGGTGCTAACTGTGGG
LOC_Os06g43060
OsAffx.28071.1.S1_at--683--8671Chr06:25879702..25879726 (25 bp)
TGTGTGTGCTTGTTGTTTGATGAAT
LOC_Os06g43060
OsAffx.28071.1.S1_at--376--5311Chr06:25879734..25879758 (25 bp)
GAAGGTAACTGATTGTTTGTTGTTG
LOC_Os06g43060
OsAffx.28071.1.S1_at--579--10191Chr06:25879761..25879785 (25 bp)
TATATGTTATGTGTACTAGTGGTAC
LOC_Os06g43060
OsAffx.28071.1.S1_at--858--3691Chr06:25879776..25879800 (25 bp)
CTAGTGGTACTAATTAGCTAGTGTT
LOC_Os06g43060
Target Sequence 
TGCACGACCCGGAGAACTCGGAGGAGGAGGGGCTGTTCAGCATGAGGGCCACCCCGCCGCCGACCGCCGCGCCGCCGGCC
GACGAGGACTACTTCGACCCCGACCTCTCCAACGACGACGACCTCGTCGTCCTCGGCCACTGAATTGAACGGCGTGTGGT
TTGGTTGTGATCGATCGACTGATCGGCAATGGATCTCATCGGCTGGGTGCTAACTGTGGGGTTAATTTTGTGTGTGCTTG
TTGTTTGATGAATTTATGATGAAGGTAACTGATTGTTTGTTGTTGATTATATGTTATGTGTACTAGTGGTACTAATTAGC
TAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis