Browse Element(s) Details


Os.50788.1.A1_at

Description gb:AK058562.1
DB_XREF= gi:32968580
TID=Os.50788.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D11, full insert sequence.
FL= gb:AK058562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4304410/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein
LOC_Os06g43030Os.50002.1.S1_at11/116+25866750..25869522protein kinase, putative, expressed
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50788.1.A1_at--56--9251Chr06:25869642..25870083 (25 bp)
TCCTTCCACACTTGGGCTGGAGAAC
LOC_Os06g43044
Os.50788.1.A1_at--106--3711Chr06:25869366..25869390 (25 bp)
CTATGGTCTCTGTGTCGATGACCGC
LOC_Os06g43044
Os.50788.1.A1_at--702--6291Chr06:25869350..25869374 (25 bp)
GATGACCGCCCGTCGTAGATAGGTT
LOC_Os06g43044
Os.50788.1.A1_at--431--3731Chr06:25869343..25869367 (25 bp)
GCCCGTCGTAGATAGGTTTTCGTCG
LOC_Os06g43044
Os.50788.1.A1_at--551--6891Chr06:25869336..25869360 (25 bp)
GTAGATAGGTTTTCGTCGAGGACGA
LOC_Os06g43044
Os.50788.1.A1_at--1078--7191Chr06:25869322..25869346 (25 bp)
GTCGAGGACGATCTAACTTGTACAC
LOC_Os06g43044
Os.50788.1.A1_at--406--8111Chr06:25869317..25869341 (25 bp)
GGACGATCTAACTTGTACACCGTTC
LOC_Os06g43044
Os.50788.1.A1_at--1054--6411Chr06:25869313..25869337 (25 bp)
GATCTAACTTGTACACCGTTCCAAT
LOC_Os06g43044
Os.50788.1.A1_at--396--2031Chr06:25869307..25869331 (25 bp)
ACTTGTACACCGTTCCAATGTGATG
LOC_Os06g43044
Os.50788.1.A1_at--22--9871Chr06:25869302..25869326 (25 bp)
TACACCGTTCCAATGTGATGATGAT
LOC_Os06g43044
Os.50788.1.A1_at--29--3591NONE
CATTTGAGTACATGTCCATCATCAT
NONE
Target Sequence 
TCCTTCCACACTTGGGCTGGAGAACGTAGAGCAGGGGTGCTGCGCGACGGGGATGTTCGAGATGAGCTACCTCTGCAACG
AGAAGAACCCCCTGACATGCCCCGACGCCGACAAGTACTTCTTCTGGGACTCCTTCCATCCGACAGAGAAGGTGAACCGG
TTCTTCGCCAATTCCACTCTGCAGATCTGCTTGAGGGAGCTCCTCTCTTGNAATGCANCAATATNTCACACATNNCCAAT
GTGGATGTACAAAAAATATTCAGACATTCAGATCAAATGTNCTATGGTCTCTGTGTCGATGACCGCCCGTCGTAGATAGG
TTTTCGTCGAGGACGATCTAACTTGTACACCGTTCCAATGTGATGATGATCAATNCTTTGGGTGGTTTTAAAGAGAGGGA
GATAAAANTTNCACATTTGAGTACATGTCCATCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50788.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis