Browse Element(s) Details


OsAffx.15903.1.S1_s_at

Description tigr:9634.m04154
TID=OsAffx.15903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=APG isolog protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4304411/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein
LOC_Os06g43030Os.50002.1.S1_at11/116+25866750..25869522protein kinase, putative, expressed
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein
LOC_Os06g43080NANA6+25895002..25895280hypothetical protein
LOC_Os06g43090Os.54569.1.S1_x_at11/116+25898447..25899816Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15903.1.S1_s_at--69--10531Chr06:25870355..25870379 (25 bp)
TTCACCGTGGGCGAGTTCGAGGACT
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--887--8451Chr06:25870177..25870201 (25 bp)
TGGCCAGGGACTACAACGTCAAGCT
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--157--7631Chr06:25870171..25870195 (25 bp)
GGGACTACAACGTCAAGCTCAACGC
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--921--9591Chr06:25870069..25870093 (25 bp)
TCATCAACAATCCTTCCACACTTGG
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--1017--7651Chr06:25869593..25869617 (25 bp)
GGGATGTTCGAGATGAGCTACCTCT
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--1000--671Chr06:25869581..25869605 (25 bp)
ATGAGCTACCTCTGCAACGAGAAGA
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--982--1811Chr06:25869538..25869562 (25 bp)
ACGCCGACAAGTACTTCTTCTGGGA
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--231--8651Chr06:25869518..25869542 (25 bp)
TGGGACTCCTTCCATCCGACAGAGA
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--981--10451Chr06:25869509..25869533 (25 bp)
TTCCATCCGACAGAGAAGGTGAACC
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--1042--5311Chr06:25869495..25869519 (25 bp)
GAAGGTGAACCGGTTCTTCGCCAAT
LOC_Os06g43044
OsAffx.15903.1.S1_s_at--13--7351Chr06:25869491..25869515 (25 bp)
GTGAACCGGTTCTTCGCCAATTCCA
LOC_Os06g43044
Target Sequence 
TTCACCGTGGGCGAGTTCGAGGACTTCCTCGTCGCGCAGGCGGCGGGGTTCCTCGCCGCCATCCACCGCCTCGGCGCGCG
CCGCGTCGCCTTCGCCGGCCTCAGCGCCATCGGCTGCCTGCCGCTGGAGCGCACGCTCAACGCCCTCCGCGGCGGCTGCG
TCGAGGAGTACAACCAGGTGGCCAGGGACTACAACGTCAAGCTCAACGCCATGATCGCCGGCCTCCAGAGCTCGCTCCCC
GGCCTCAAGATCGCCTACGTCCCCGTCTACGACGACATGCTCAACCTCATCAACAATCCTTCCACACTTGGTGAGCTATA
TATATTTGGCGCTGTTCTTTTCAGCTTCTTCACCGGATTATTATCGCAGATTATTTGTTTCACGTACGCTGGGCTGGAGA
ACGTAGAGCAGGGGTGCTGCGCGACGGGGATGTTCGAGATGAGCTACCTCTGCAACGAGAAGAACCCCCTGACATGCCCC
GACGCCGACAAGTACTTCTTCTGGGACTCCTTCCATCCGACAGAGAAGGTGAACCGGTTCTTCGCCAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15903.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis