Browse Element(s) Details


Os.8847.1.S1_at

Description gb:AK068891.1
DB_XREF= gi:32978916
TID=Os.8847.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002H17, full insert sequence.
FL= gb:AK068891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g024508/11pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os06g430441/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8847.1.S1_at--688--8571Chr06:25871525..25871948 (25 bp)
TGGATTTATCATGGTCTACTAGTAC
LOC_Os06g43044
Os.8847.1.S1_at--812--7931NONE
GGATTTATCATGGTCTACTAGTACC
NONE
Os.8847.1.S1_at--216--6531NONE
GATTTATCATGGTCTACTAGTACCT
NONE
Os.8847.1.S1_at--508--8791Chr03:859762..859786 (25 bp)
TGTTAATGCCATACCATGGATGTTG
LOC_Os03g02450
Os.8847.1.S1_at--845--6751Chr03:859763..859787 (25 bp)
GTTAATGCCATACCATGGATGTTGT
LOC_Os03g02450
Os.8847.1.S1_at--312--9771Chr03:859765..859789 (25 bp)
TAATGCCATACCATGGATGTTGTCC
LOC_Os03g02450
Os.8847.1.S1_at--586--3031Chr03:859766..859790 (25 bp)
AATGCCATACCATGGATGTTGTCCT
LOC_Os03g02450
Os.8847.1.S1_at--711--591Chr03:859767..859791 (25 bp)
ATGCCATACCATGGATGTTGTCCTG
LOC_Os03g02450
Os.8847.1.S1_at--952--9191Chr03:859768..859792 (25 bp)
TGCCATACCATGGATGTTGTCCTGG
LOC_Os03g02450
Os.8847.1.S1_at--901--4431Chr03:859769..859793 (25 bp)
GCCATACCATGGATGTTGTCCTGGC
LOC_Os03g02450
Os.8847.1.S1_at--385--4311Chr03:859770..859794 (25 bp)
CCATACCATGGATGTTGTCCTGGCC
LOC_Os03g02450
Target Sequence 
TGGATTTATCATGGTCTACTAGTACCTCTCTTTTCCGAGCAAACTTTAGGGGAACTGTGATGTGCACTAGGGTTCCCGAT
CTTCCAAAAGGTTCTGATAAACAACGATTTGGGCGGAGTCACGACACAAATCGATCCGGCTTCTTGAACGCGCACGCTCT
TGAGCCCCGCAATCGCAGCACCACGTCTATCCGAGTTAGTGATGTCCGCATCAAACTGCATATGTTATTCGTTAACAGAG
GGAGGAAAAAGAGTCAATACAGTACAAATAAATCAGAGATTAATGGACAGTGCAAATAAATACTACTACTATAACTCTTG
CCTGTACATAGTCATTTTTTCTTGTTTCTCTTGATATTTTATGTATTCCAGTTTCCTTACAGGAATGTTAATGCCATACC
ATGGATGTTGTCCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis