Browse Element(s) Details


Os.4281.1.S1_x_at

Description gb:NM_185488.1
DB_XREF= gi:34898061
TID=Os.4281.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to ribitol dehydrogenase isolog (AC002343) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to ribitol dehydrogenase isolog (AC002343) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0383011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g024601/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4281.1.S1_x_at--122--8911Chr06:1539053..1539077 (25 bp)
TGACCTTCGCCACAAACTACTTGGG
LOC_Os06g03830
Os.4281.1.S1_x_at--583--10671Chr06:1539203..1539227 (25 bp)
TTCCTGCTGACGAAGCTGCTGATGG
LOC_Os06g03830
Os.4281.1.S1_x_at--49--531Chr06:1539332..1539356 (25 bp)
ATCGACGCCGTCACGCGCAGGAAGA
LOC_Os06g03830
Os.4281.1.S1_x_at--635--5351Chr06:1539132..1539515 (25 bp)
GAAGATACCGTACGATCCGACGAGA
LOC_Os06g03830
Os.4281.1.S1_x_at--698--3951Chr06:1540667..1540691 (25 bp)
CGGAGTGTCCGGCAAGTACTTCGCC
LOC_Os06g03830
Os.4281.1.S1_x_at--239--2832Chr06:1540680..1540704 (25 bp)
AAGTACTTCGCCGACTGCAACGAGG
LOC_Os06g03830
Os.4281.1.S1_x_at--149--9391Chr06:1540713..1540737 (25 bp)
TCGAGGCTGGGATCCAACGCCGACG
LOC_Os06g03830
Os.4281.1.S1_x_at--437--891Chr06:1540738..1540762 (25 bp)
AGGCCGCCAAGCTGTGGAGATTCTC
LOC_Os06g03830
Os.4281.1.S1_x_at--821--1251Chr06:1540755..1540779 (25 bp)
AGATTCTCCGACGAGGTCGCTGCGG
LOC_Os06g03830
Os.4281.1.S1_x_at--887--971Chr06:1540789..1540813 (25 bp)
AGGAGAGTGTTCATGCCGGCAGCTT
LOC_Os06g03830
Os.4281.1.S1_x_at--258--5071Chr06:1540807..1540831 (25 bp)
GCAGCTTCAGGCTCCAGGTTCAGAG
LOC_Os06g03830
Target Sequence 
TGACCTTCGCCACAAACTACTTGGGGCACTTCCTGCTGACGAAGCTGCTGATGGAGAAGATGGCGGAGACGGCGGCGGCG
ACCGGCGTCGAGGGCCGCATCGTCAACGTATCCTCCACAATCCACAGCTGGTTCGCCGGCGACGACGCCGTCGGCTACAT
CGACGCCGTCACGCGCAGGAAGATACCGTACGATCCGACGAGAGCCTACGCGCTCTCCAAGCTGGCCAACGTTCTCCACA
CGAGGGCACTCGCGGATCGGCTCAAGGNGNNGNNNNCNANNNNNNNNGNNNNNNNGCACCCGGCGGTGGCCGGAGTGTCC
GGCAAGTACTTCGCCGACTGCAACGAGGCGTCGCCGTCGAGGCTGGGATCCAACGCCGACGAGGCCGCCAAGCTGTGGAG
ATTCTCCGACGAGGTCGCTGCGGAGGAGAAGGAGGAGAGTGTTCATGCCGGCAGCTTCAGGCTCCAGGTTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4281.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis