Browse Element(s) Details


OsAffx.27447.1.S1_at

Description gb:NM_185487.1
DB_XREF= gi:34898059
TID=OsAffx.27447.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g038209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27447.1.S1_at--63--4711Chr06:1529913..1529937 (25 bp)
GCGGCGTCGATCCTCCAATGCTGCG
LOC_Os06g03820
OsAffx.27447.1.S1_at--318--7891Chr06:1529938..1529962 (25 bp)
GGTTCCTGGACAGCCCGGAGCTTGA
LOC_Os06g03820
OsAffx.27447.1.S1_at--724--2151Chr06:1529947..1529971 (25 bp)
ACAGCCCGGAGCTTGAGGTGAAGCT
LOC_Os06g03820
OsAffx.27447.1.S1_at--1042--7571Chr06:1530010..1530034 (25 bp)
GGGCGGCCGTGCAGATGTATCTCAA
LOC_Os06g03820
OsAffx.27447.1.S1_at--777--6271Chr06:1530023..1530047 (25 bp)
GATGTATCTCAACGAGGCCGTCTTC
LOC_Os06g03820
OsAffx.27447.1.S1_at--944--10591Chr06:1530045..1530069 (25 bp)
TTCTGCTGGTACCAGCGGCTGCACG
LOC_Os06g03820
OsAffx.27447.1.S1_at--725--3951Chr06:1530082..1530106 (25 bp)
CGGACACGGAGTACGGCCGCGCCAA
LOC_Os06g03820
OsAffx.27447.1.S1_at--897--4811Chr06:1530173..1530197 (25 bp)
GCTCTCGCTGCTGGCATTGTGGCGA
LOC_Os06g03820
OsAffx.27447.1.S1_at--646--10691Chr06:1530259..1530283 (25 bp)
TTGCCATGAAGGAGGCTGCATTGCT
LOC_Os06g03820
OsAffx.27447.1.S1_at--1101--6731Chr06:1532384..1532408 (25 bp)
GTTCATCAGTGCGTTTGACTTGGCC
NONE
OsAffx.27447.1.S1_at--760--3451Chr06:1532390..1532414 (25 bp)
CAGTGCGTTTGACTTGGCCACCTAT
NONE
Target Sequence 
GCGGCGTCGATCCTCCAATGCTGCGGGTTCCTGGACAGCCCGGAGCTTGAGGTGAAGCTGCTCGCCGCCGCGGCGGGGCT
GCAGCTGCTGGCCTCGCGGGCGGCCGTGCAGATGTATCTCAACGAGGCCGTCTTCTGCTGGTACCAGCGGCTGCACGTCA
GCCGCTCGCCGGACACGGAGTACGGCCGCGCCAAGGTGTTCCTGCACAACCACCATCTCTGCGCCGTGGCCACGCAGCTC
GTCGCGCCGCCACTGCTCGTGCTCTCGCTGCTGGCATTGTGGCGAGTGCAAGGAAAAGATTACTTTGAGGGCGTGGAGGA
GCTGAACTGGCTTGTTGGGTGGTCGGTTGCCATGAAGGAGGCTGCATTGCTCGCGGCGCGGTGGATCGTTGCGGTTTGGT
CGACGGTGACCGTGGGCACGCTCGTGTTTTACAAGCGNNGNTGGNNANTNGNNNNNNNNAAGTTCATCAGTGCGTTTGAC
TTGGCCACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis