Browse Element(s) Details


Os.18518.1.S1_at

Description gb:AK072613.1
DB_XREF= gi:32982636
TID=Os.18518.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU030224(E50782),AU077702(E50782) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone T29A15 (AL035602) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133G19, full insert sequence.
FL= gb:AK072613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0385011/11impaired sucrose induction 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18518.1.S1_at--383--1431Chr06:1546577..1546601 (25 bp)
AGAAAACTCTCCCATACACGAACAA
LOC_Os06g03850
Os.18518.1.S1_at--443--171Chr06:1546546..1546570 (25 bp)
ATTTTGTTCGGCGAGCAGTGCGCAT
LOC_Os06g03850
Os.18518.1.S1_at--673--6011Chr06:1546442..1546466 (25 bp)
GAGAGTTGTTGAATCCTTGGAGCCC
LOC_Os06g03850
Os.18518.1.S1_at--429--8091Chr06:1546424..1546448 (25 bp)
GGAGCCCTACTAAGACAAAGCACAT
LOC_Os06g03850
Os.18518.1.S1_at--596--8731Chr06:1546385..1546409 (25 bp)
TGTCTTCCTGACAATGGTCTGATAT
LOC_Os06g03850
Os.18518.1.S1_at--943--7791Chr06:1546370..1546394 (25 bp)
GGTCTGATATCACTGATCCAAGCAA
LOC_Os06g03850
Os.18518.1.S1_at--291--1491Chr06:1546350..1546374 (25 bp)
AGCAATGTGCTTCATTTGCCTATAG
LOC_Os06g03850
Os.18518.1.S1_at--707--6951Chr06:1546299..1546323 (25 bp)
GTAGAGCCATTCTTATGTTTCTGTA
LOC_Os06g03850
Os.18518.1.S1_at--94--231Chr06:1546255..1546279 (25 bp)
ATATTCTATTAGTTCAGCTTTGCAG
LOC_Os06g03850
Os.18518.1.S1_at--1133--10051Chr06:1546175..1546199 (25 bp)
TAGGGCTTGTAGTGGTTCCCCATTT
LOC_Os06g03850
Os.18518.1.S1_at--1048--191Chr06:1546126..1546150 (25 bp)
ATTTGCCTACAAATTGCCTTTTATG
LOC_Os06g03850
Target Sequence 
AGAAAACTCTCCCATACACGAACAAATGAGAATTTTGTTCGGCGAGCAGTGCGCATCACTGATATGGGCAGCAAGTCGGT
TTGGCTCCACTCTCGACGTGGAGCAGAGGCAGATGGCCTTGCAAATACAAGCAAGGAGAGTTGTTGAATCCTTGGAGCCC
TACTAAGACAAAGCACATCNAATGCGTTCNTTTTTGTCTTCCTGACAATGGTCTGATATCACTGATCCAAGCAATGTGCT
TCATTTGCCTATAGCAAAGCTTTGTTGTCATATTTTCTGTGTAGAGCCATTCTTATGTTTCTGTATGTACAAACTTTGTT
GAAAATATTCTATTAGTTCAGCTTTGCAGAAAAGATGTTATTAGTTTCCATTCGAAAACCATGGACTAGGTTACGGTGGT
AACTTAGGGCTTGTAGTGGTTCCCCATTTTGTAAACCGTGGGTTTAATACGAAATTTGCCTACAAATTGCCTTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis