Browse Element(s) Details


Os.50129.1.S1_at

Description gb:AK119921.1
DB_XREF= gi:37989544
TID=Os.50129.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G07, full insert sequence.
FL= gb:AK119921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0380011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50129.1.S1_at--444--2731Chr06:1520745..1520769 (25 bp)
AAGAATTTACTGCTGTCCTGGTAGA
LOC_Os06g03800
Os.50129.1.S1_at--971--4711Chr06:1520756..1520780 (25 bp)
GCTGTCCTGGTAGATCCCATATTAA
LOC_Os06g03800
Os.50129.1.S1_at--946--371Chr06:1520816..1520840 (25 bp)
ATCACAATCAGTCCTAGCTAGCTTT
LOC_Os06g03800
Os.50129.1.S1_at--360--4891Chr06:1520836..1520860 (25 bp)
GCTTTATCCCGCGATGGCTGAATGA
LOC_Os06g03800
Os.50129.1.S1_at--313--1751Chr06:1520872..1520896 (25 bp)
ACCTAACGGCAGGATGATTAATTCT
LOC_Os06g03800
Os.50129.1.S1_at--290--3011Chr06:1520900..1520924 (25 bp)
AATGACCAATTGATCACTCGTCTCT
LOC_Os06g03800
Os.50129.1.S1_at--438--3331Chr06:1520914..1520938 (25 bp)
CACTCGTCTCTTAATCTGATTTGCG
LOC_Os06g03800
Os.50129.1.S1_at--882--2071Chr06:1520981..1521005 (25 bp)
ACATTTACGCATGCAAGTTGCCTCT
LOC_Os06g03800
Os.50129.1.S1_at--922--10691Chr06:1520998..1521022 (25 bp)
TTGCCTCTATTCATTTTGCGGGTTA
LOC_Os06g03800
Os.50129.1.S1_at--789--2431Chr06:1521075..1521099 (25 bp)
AAAATTCCTTTTCATGTTGATTGGG
LOC_Os06g03800
Os.50129.1.S1_at--454--3151Chr06:1521139..1521163 (25 bp)
AATTCGTCAATTATCATGCTTCTCC
LOC_Os06g03800
Target Sequence 
AAGAATTTACTGCTGTCCTGGTAGATCCCATATTAATTATTAATCTTTTAAGTGTTGCGCAAAAAATGGAAATCACAATC
AGTCCTAGCTAGCTTTATCCCGCGATGGCTGAATGAGGTGACAGAAAACCTAACGGCAGGATGATTAATTCTTCAAATGA
CCAATTGATCACTCGTCTCTTAATCTGATTTGCGTGCCAAAAATGAAGAAGAAAACGTCATCATTAGTGAGATGTAACAT
TTACGCATGCAAGTTGCCTCTATTCATTTTGCGGGTTATTGTTATGCTGATGTGTGTGATTTGTAATTGTGTACCAACAC
TTATATACTTAAAATTCCTTTTCATGTTGATTGGGAATCGATGCAACTATAAAAGAAAGTGACACTATTAATGGAATTCG
TCAATTATCATGCTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis