Browse Element(s) Details


OsAffx.22594.1.S1_x_at

Description gb:NM_185486.1
DB_XREF= gi:34898057
TID=OsAffx.22594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22594.1.S1_x_at--689--8471Chr06:1526513..1526537 (25 bp)
TGGCGCTGGAGGTGACCGTCTTGTC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--384--8931Chr06:1526501..1526525 (25 bp)
TGACCGTCTTGTCGGCGGAGTCGCT
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--406--4531Chr06:1526467..1526491 (25 bp)
GCCGCCGTCGTATTATTCGCTGATC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--34--9371Chr06:1526460..1526484 (25 bp)
TCGTATTATTCGCTGATCCCGAGGC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--109--10411Chr06:1526455..1526479 (25 bp)
TTATTCGCTGATCCCGAGGCGGCTG
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--499--8331Chr06:1526435..1526459 (25 bp)
GGCTGCGGCCGTACGTGACGGTGTC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--395--1611Chr06:1526367..1526391 (25 bp)
AGCGGCGAGCACTCGTGGAACGACA
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--274--2011Chr06:1526357..1526381 (25 bp)
ACTCGTGGAACGACACGCTCGTCGT
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--538--7471Chr06:1526328..1526352 (25 bp)
GTGGGCGCGGAGTTCCTCGAGAGCC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--107--7351Chr06:1526289..1526313 (25 bp)
GTGCACGTGGCGGTGTACTCGGAGC
LOC_Os06g03810
OsAffx.22594.1.S1_x_at--338--7551Chr06:1526016..1526040 (25 bp)
GTGGCGATGGGCATCCCGGTGTCGG
LOC_Os06g03810
Target Sequence 
TGGCGCTGGAGGTGACCGTCTTGTCGGCGGAGTCGCTGCGGCTGCCGCCGCCGTCGTATTATTCGCTGATCCCGAGGCGG
CTGCGGCCGTACGTGACGGTGTCGTCGGCGGCGTCGGCGTGCAGCACGGACGTGGCGGCGGCGGCGAGCGGCGAGCACTC
GTGGAACGACACGCTCGTCGTCCCCGTGGGCGCGGAGTTCCTCGAGAGCCGCGGCGGCGGCGGCGTGCACGTGGCGGTGT
ACTCGGAGCCGGCGTGCCGGCTCGTCGGCGGCGCCACGCCGCTGGGGTGGTGCAGGATCCCCGCCGCCGACGTGCTCGAC
GGCCTCCGCCCGCCGCGCGCGCTCCGCCGGCTCAGCTACTCCCTCCGCTGCCCGCGCACCGGCGGCCCCGCCCGCGGCGT
CGTGCACCTCGCCGTCCGCGTCCTCGGCGACCTCGTCCCGCCGCCTCCGCCGCAGCATGCCCCGTCGACGCCGCCGGCGC
AGCCAGGGTGGTGCCGCGTGGCGATGGGCATCCCGGTGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22594.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis