Browse Element(s) Details

Os.10814.1.S1_a_at

Description

gb:AK072699.1
DB_XREF= gi:32982722
TID=Os.10814.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU067992(C11433),AU077424(C11433) correspond to a region of the predicted gene.~Similar to ABC transporter-7 (U43892) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139I17, full insert sequence.
FL= gb:AK064342.1 gb:AK072699.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03770	11/11	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_x_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.2.S1_x_at	7/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750	Os.44810.1.S1_at	11/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03750	Os.52574.2.S1_x_at	1/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03760	Os.4272.1.S1_a_at	11/11	6	+	1484975..1489635	LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770	Os.10814.1.S1_a_at	11/11	6	+	1491885..1501584	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780	OsAffx.10361.1.S1_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03780	Os.50592.1.S1_x_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03790	OsAffx.4708.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.22596.1.S1_x_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_s_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	Os.37435.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_at	10/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800	Os.44806.1.A1_x_at	11/11	6	+	1519744..1525082	ankyrin repeat family protein, putative, expressed
LOC_Os06g03800	Os.50129.1.S1_at	11/11	6	+	1519744..1525082	ankyrin repeat family protein, putative, expressed
LOC_Os06g03810	OsAffx.22594.1.S1_x_at	11/11	6	+	1525945..1526622	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0040014	biological_process	regulation of body size
GO:0005739	cellular_component	mitochondrion
GO:0005215	molecular_function	transporter activity
GO:0042626	molecular_function	ATPase activity, coupled to transmembrane movement of substances

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10814.1.S1_a_at--1038--119	1	Chr06:1493065..1493089 (25 bp)	AGTATCAATTGCTCGTGTATTCTTG	LOC_Os06g03770
Os.10814.1.S1_a_at--366--95	1	Chr06:1492758..1493063 (25 bp)	AGGAACCTTCCATTCTATTGTGTGA	LOC_Os06g03770
Os.10814.1.S1_a_at--1115--27	1	Chr06:1492713..1492737 (25 bp)	ATAGCACCACCGAAGCGTCAATTTT	LOC_Os06g03770
Os.10814.1.S1_a_at--193--899	1	Chr06:1492680..1492704 (25 bp)	TGAAGACTTTGTCCGTTGACCGTAC	LOC_Os06g03770
Os.10814.1.S1_a_at--148--699	1	Chr06:1492659..1492683 (25 bp)	GTACCTCTATCTTTATTGCACATCG	LOC_Os06g03770
Os.10814.1.S1_a_at--747--511	1	Chr06:1492642..1492666 (25 bp)	GCACATCGACTGACAACTGCAATGC	LOC_Os06g03770
Os.10814.1.S1_a_at--36--223	1	Chr06:1492263..1492287 (25 bp)	ACAAGGACCACATGATTTTCTGCTG	LOC_Os06g03770
Os.10814.1.S1_a_at--965--1029	1	Chr06:1492247..1492271 (25 bp)	TTTCTGCTGTCAAAGGGTGGCCGAT	LOC_Os06g03770
Os.10814.1.S1_a_at--358--63	1	Chr06:1492180..1492204 (25 bp)	ATGCTGCCGCGGTTAGCTTAGAGGT	LOC_Os06g03770
Os.10814.1.S1_a_at--995--491	1	Chr06:1492089..1492113 (25 bp)	GCTTCCCCATATCTGCATTGTAAAT	LOC_Os06g03770
Os.10814.1.S1_a_at--7--817	2	Chr07:1912757..1912780 (23 bp)	GGAAACACCCAACAGTTCGACATGT	NONE

Target Sequence

AGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCA
CCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATTGCACATCGACTGACAACT
GCAATGCAATGTGATGAGATTATTGTTTTGGAGAATGGGGAGGTAGTGGAACAAGGACCACATGATTTTCTGCTGTCAAA
GGGTGGCCGATATGCTGAATTGTGGTCACAGCAGAATAACAGTGATGCCATCGATGCTGCCGCGGTTAGCTTAGAGGTTT
CATAGACTATATACATAATTCCCTTTTGCAAGGGAAAATGCAAACCATATTTGAATGAAAGAAGGCTTCCCCATATCTGC
ATTGTAAATTGAATGGTTAGGTTTTTAGATATCGGGGAACAGAAATTTATAGCTTAGGAGCAAATAACTCCGTTTGAAAG
AAAGCCAGGAGGCAAAATTTTCCTCTTTGAGGAAACACCCAACAGTTCGACATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis