Browse Element(s) Details


Os.44806.1.A1_x_at

Description gb:CB675002
DB_XREF= gi:29678727
DB_XREF=OSJNEe10G15.r
CLONE=OSJNEe10G15
TID=Os.44806.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to mouse ankyrin 3 (AC005727) (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0380011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44806.1.A1_x_at--103--5331Chr06:1524544..1524568 (25 bp)
GAAGGGATACGGCAGCATCGACCCC
LOC_Os06g03800
Os.44806.1.A1_x_at--1032--3851Chr06:1524626..1524650 (25 bp)
CTGACCTGATCGGAGATTGGAGATT
LOC_Os06g03800
Os.44806.1.A1_x_at--1161--6031Chr06:1524638..1524662 (25 bp)
GAGATTGGAGATTCAGTTCTGAAGC
LOC_Os06g03800
Os.44806.1.A1_x_at--177--751Chr06:1524667..1524691 (25 bp)
ATGTTTGTCTTTGCAAGAGCTCTGA
LOC_Os06g03800
Os.44806.1.A1_x_at--228--3671Chr06:1524675..1524699 (25 bp)
CTTTGCAAGAGCTCTGAATTTGGCA
LOC_Os06g03800
Os.44806.1.A1_x_at--963--1251Chr06:1524703..1524727 (25 bp)
AGATATGTTTCTCGGTTTCTGAAGA
LOC_Os06g03800
Os.44806.1.A1_x_at--88--6851Chr06:1524717..1524741 (25 bp)
GTTTCTGAAGAGATGTGTCTCGCAA
LOC_Os06g03800
Os.44806.1.A1_x_at--712--2431Chr06:1524744..1524768 (25 bp)
AAAAGGCAGCTCTGAATTTGGGAGA
LOC_Os06g03800
Os.44806.1.A1_x_at--636--7471Chr06:1524770..1524794 (25 bp)
GTGTGTCTCTTCTTTGATTCGTCAA
LOC_Os06g03800
Os.44806.1.A1_x_at--519--91Chr06:1524786..1524810 (25 bp)
ATTCGTCAAGCAAAGATCATTAAGG
LOC_Os06g03800
Os.44806.1.A1_x_at--146--10831Chr06:1524960..1524984 (25 bp)
TTGTGTTGGGTTGGTCTGAATGTAT
LOC_Os06g03800
Target Sequence 
GAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCA
TCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGA
GATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTT
TGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGG
TTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGG
GGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44806.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis