Browse Element(s) Details


OsAffx.10361.1.S1_at

Description tigr:9634.m00285
TID=OsAffx.10361.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY069919 AT3g56990F24I3_70
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0378011/11Nucleolar protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03750Os.44810.1.S1_at11/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03750Os.52574.2.S1_x_at1/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03760Os.4272.1.S1_a_at11/116+1484975..1489635LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10361.1.S1_at--832--2091Chr06:1509888..1509912 (25 bp)
ACATCTTTGAAGGAGCCTCGTCTAA
LOC_Os06g03780
OsAffx.10361.1.S1_at--468--691Chr06:1510357..1510381 (25 bp)
ATGACCGTCACGCTGAGGCATTTTT
LOC_Os06g03780
OsAffx.10361.1.S1_at--106--8271Chr06:1510373..1510397 (25 bp)
GGCATTTTTGAATAGCACCTCCCTT
LOC_Os06g03780
OsAffx.10361.1.S1_at--715--6151Chr06:1510404..1510428 (25 bp)
GAGGATGCTCTACCTATTGGCGATA
LOC_Os06g03780
OsAffx.10361.1.S1_at--550--3691Chr06:1510417..1510441 (25 bp)
CTATTGGCGATAGGGTAGCTGCTCT
LOC_Os06g03780
OsAffx.10361.1.S1_at--667--5071Chr06:1510448..1510472 (25 bp)
GCAGCGGAACTCCAATGCACTTGAT
LOC_Os06g03780
OsAffx.10361.1.S1_at--821--7731Chr06:1510491..1510515 (25 bp)
GGTGGTTCACGCGAGATCTCATTCA
LOC_Os06g03780
OsAffx.10361.1.S1_at--1041--6411Chr06:1510505..1510529 (25 bp)
GATCTCATTCATCGCTAGAGGCTCA
LOC_Os06g03780
OsAffx.10361.1.S1_at--321--3871Chr06:1510549..1510573 (25 bp)
CTGATGACGAAGAGCCCAAGGATTT
LOC_Os06g03780
OsAffx.10361.1.S1_at--668--1331Chr06:1510581..1510605 (25 bp)
AGAGGTGTGCAATCCCTGGGCTTGA
LOC_Os06g03780
OsAffx.10361.1.S1_at--575--1171Chr06:1510621..1510645 (25 bp)
AGTACTATTTGTTCGGTGGAAGCCG
LOC_Os06g03780
Target Sequence 
ACATCTTTGAAGGAGCCTCGTCTAATTGAGGAACATTTTGAGACTGTTAGTGATGATGAGGAACAAGAAGATGCTAGTTC
ATCTGATGCATCAGCAGAGTCTGACAGTGACAATGGCATGCAAAGTTCAAAGCGTATAAGGTTGTATGAAGTCAAGGATG
ACCGTCACGCTGAGGCATTTTTGAATAGCACCTCCCTTGCCAATGAGGATGCTCTACCTATTGGCGATAGGGTAGCTGCT
CTGGAGAGGCAGCGGAACTCCAATGCACTTGATGAGGTAAAGTATGGACCTGGTGGTTCACGCGAGATCTCATTCATCGC
TAGAGGCTCAAGAAGGCGCAACGAAGAATCTGATGACGAAGAGCCCAAGGATTTCAAGAGGAGAGGTGTGCAATCCCTGG
GCTTGAAACAAGGCAAAGCCGAGTACTATTTGTTCGGTGGAAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis