Browse Element(s) Details

Os.4272.1.S1_a_at

Description

gb:AK059076.1
DB_XREF= gi:32969094
TID=Os.4272.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038F22.20 (OSJNBa0038F22.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A05, full insert sequence.
FL= gb:AK059076.1 gb:AK068886.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03760	11/11	LMBR1 integral membrane family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_x_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.2.S1_x_at	7/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750	Os.44810.1.S1_at	11/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03750	Os.52574.2.S1_x_at	1/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03760	Os.4272.1.S1_a_at	11/11	6	+	1484975..1489635	LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770	Os.10814.1.S1_a_at	11/11	6	+	1491885..1501584	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780	OsAffx.10361.1.S1_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03780	Os.50592.1.S1_x_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03790	OsAffx.4708.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.22596.1.S1_x_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_s_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	Os.37435.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_at	10/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4272.1.S1_a_at--823--117	1	Chr06:1485625..1485648 (24 bp)	AGTACAATGTTTTCCAGTATGGCTT	LOC_Os06g03760
Os.4272.1.S1_a_at--1104--85	1	Chr06:1485607..1485631 (25 bp)	ATGGCTTTGTGGCTCTTGCGATACT	LOC_Os06g03760
Os.4272.1.S1_a_at--525--1069	1	Chr06:1485592..1485616 (25 bp)	TTGCGATACTCACACTCTTTTACTA	LOC_Os06g03760
Os.4272.1.S1_a_at--926--819	1	Chr06:1485443..1485467 (25 bp)	GGAAGATTCCAGCTCTCAAATTGAT	LOC_Os06g03760
Os.4272.1.S1_a_at--86--651	1	Chr06:1485421..1485445 (25 bp)	GATTTGTGGTTTGTTCTGTAAGGAA	LOC_Os06g03760
Os.4272.1.S1_a_at--761--291	1	Chr06:1485402..1485426 (25 bp)	AAGGAAGCCTGACGAATTGAACTAC	LOC_Os06g03760
Os.4272.1.S1_a_at--1084--71	1	Chr06:1485335..1485359 (25 bp)	ATGATCTTTGAAACCGCTTTCTCAA	LOC_Os06g03760
Os.4272.1.S1_a_at--712--343	1	Chr06:1485247..1485271 (25 bp)	CAGTAGGGCACGGACATGGTTGTTA	LOC_Os06g03760
Os.4272.1.S1_a_at--602--261	1	Chr06:1485215..1485239 (25 bp)	AACCCAGCTGCCTTTGTAATGTACA	LOC_Os06g03760
Os.4272.1.S1_a_at--383--299	1	Chr06:1485198..1485222 (25 bp)	AATGTACACATTTCTCATCGCGGCT	LOC_Os06g03760
Os.4272.1.S1_a_at--29--17	1	Chr06:1485157..1485181 (25 bp)	ATTATTATTTTACACTTGGCTGATG	LOC_Os06g03760

Target Sequence

AGTACAATGTTTTCCAGTATGGCTTTGTGGCTCTTGCGATACTCACACTCTTTTACTATGCAATATTTGGATGGCGAAAG
AGGAAACCGACANGGAAGATTCCAGCTCTCAAATTGATTTGTGGTTTGTTCTGTAAGGAAGCCTGACGAATTGAACTACN
AAACATATTTGTTCACGAGTGATAGATTGGTTAGCNATGTATATGATCTTTGAAACCGCTTTCTCAAAGAGCTGGAGAGT
TTATCCATGTAAATTAGCAACCATGAAGTATAAGGAGAAAACTGAGATTTCAGTAGGGCACGGACATGGTTGTTAAAAGC
AGAACCCAGCTGCCTTTGTAATGTACACATTTCTCATCGCGGCTCTTCTTTTCCTTGTGTATTATTATTTTACACTTGGC
TGATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis