Browse Element(s) Details


OsAffx.27446.1.S1_s_at

Description tigr:9634.m00287
TID=OsAffx.27446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY081746 At1g07830F24B9_7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0379011/11mitochondrial ribosomal protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03760Os.4272.1.S1_a_at11/116+1484975..1489635LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27446.1.S1_s_at--34--4051Chr06:1514059..1514083 (25 bp)
CGAGTTACGCCTAAAATCCTGGGAT
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--695--3031Chr06:1514073..1514097 (25 bp)
AATCCTGGGATGACCTTCAGAAGCT
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--201--2712Chr06:1514093..1514117 (25 bp)
AAGCTATGGTATGTCCTTCTGAAGG
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--388--4891Chr06:1514128..1514152 (25 bp)
GCTTATGAGTCAGCGCCAGATGCTA
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--1009--4551Chr06:1514140..1514164 (25 bp)
GCGCCAGATGCTACATTCAGAGAAT
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--892--5951Chr06:1514159..1514183 (25 bp)
GAGAATATGCGTTTTCCAAACCCTG
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--784--9191Chr06:1514173..1514197 (25 bp)
TCCAAACCCTGAACGTGTTTCCAAG
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--552--9211Chr06:1514988..1515008 (21 bp)
TCCAAGGTGAAGAAGTCAATGTGTC
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--529--791Chr06:1515002..1515026 (25 bp)
ATGTGTCGAATAAAGCATGTCTTGA
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--986--5551Chr06:1515029..1515053 (25 bp)
GAAAGGGCCATAGCAGAACCTGACC
LOC_Os06g03790
OsAffx.27446.1.S1_s_at--838--1431Chr06:1515043..1515067 (25 bp)
AGAACCTGACCCAAGGAGATCCGCA
LOC_Os06g03790
Target Sequence 
CGAGTTACGCCTAAAATCCTGGGATGACCTTCAGAAGCTATGGTATGTCCTTCTGAAGGAAAAGAACATGCTTATGAGTC
AGCGCCAGATGCTACATTCAGAGAATATGCGTTTTCCAAACCCTGAACGTGTTTCCAAGGTGAAGAAGTCAATGTGTCGA
ATAAAGCATGTCTTGACTGAAAGGGCCATAGCAGAACCTGACCCAAGGAGATCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27446.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis