Browse Element(s) Details


Os.50592.1.S1_x_at

Description gb:AK064390.1
DB_XREF= gi:32974408
TID=Os.50592.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F08, full insert sequence.
FL= gb:AK064390.1 gb:AK121983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0378011/11Nucleolar protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03750Os.44810.1.S1_at11/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03750Os.52574.2.S1_x_at1/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03760Os.4272.1.S1_a_at11/116+1484975..1489635LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780OsAffx.10361.1.S1_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03780Os.50592.1.S1_x_at11/116+1503212..1510787Nucleolar protein 10, putative, expressed
LOC_Os06g03790OsAffx.4708.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.22596.1.S1_x_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_s_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790Os.37435.1.S1_at11/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790OsAffx.27446.1.S1_at10/116+1511827..1515435mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50592.1.S1_x_at--630--5431Chr06:1507740..1507764 (25 bp)
GAACCTAAGCTGATTACTGCTGACA
LOC_Os06g03780
Os.50592.1.S1_x_at--19--691Chr06:1507904..1507928 (25 bp)
ATGACTAGCATTGAACCAGATGGTG
LOC_Os06g03780
Os.50592.1.S1_x_at--638--3191Chr06:1507936..1507960 (25 bp)
CAATGATGTTTGTGTTTTCCGGAAC
LOC_Os06g03780
Os.50592.1.S1_x_at--590--4871Chr06:1507979..1508003 (25 bp)
GCTTTGGACAATAGCCAGATCCCTG
LOC_Os06g03780
Os.50592.1.S1_x_at--281--3311Chr06:1508006..1508030 (25 bp)
CACTTTATTCCTGCATTGGGCCCTG
LOC_Os06g03780
Os.50592.1.S1_x_at--793--11Chr06:1508020..1508044 (25 bp)
ATTGGGCCCTGCTCCAAAGTGGTGC
LOC_Os06g03780
Os.50592.1.S1_x_at--964--7491Chr06:1508038..1508062 (25 bp)
GTGGTGCTCGCATCTTGATAATCTA
LOC_Os06g03780
Os.50592.1.S1_x_at--671--6391Chr06:1508217..1508241 (25 bp)
GATCGATATGATCTCTCTAAGTACA
LOC_Os06g03780
Os.50592.1.S1_x_at--1103--6411Chr06:1508244..1508268 (25 bp)
GATCAGGGTCTTGTGAGAGCGCATA
LOC_Os06g03780
Os.50592.1.S1_x_at--560--4851Chr06:1508567..1508591 (25 bp)
GCTACTAGTGCTGTTGATCCTGAGA
LOC_Os06g03780
Os.50592.1.S1_x_at--627--2271Chr06:1508636..1508760 (25 bp)
AAATCTCGCATAACGCAAGTTGTGA
LOC_Os06g03780
Target Sequence 
GAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGA
ACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGA
TCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAA
GAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTA
CATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTA
GTGCTGTTGATCCTGAGAATATTCAAGAGAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAA
GTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50592.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis