Browse Element(s) Details

OsAffx.27446.1.S1_at

Description

tigr:9634.m00287
TID=OsAffx.27446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY081746 At1g07830F24B9_7
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03790	10/11	mitochondrial ribosomal protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03760	Os.4272.1.S1_a_at	11/11	6	+	1484975..1489635	LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770	Os.10814.1.S1_a_at	11/11	6	+	1491885..1501584	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780	OsAffx.10361.1.S1_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03780	Os.50592.1.S1_x_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03790	OsAffx.4708.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.22596.1.S1_x_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_s_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	Os.37435.1.S1_at	11/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03790	OsAffx.27446.1.S1_at	10/11	6	+	1511827..1515435	mitochondrial ribosomal protein, putative, expressed
LOC_Os06g03800	Os.44806.1.A1_x_at	11/11	6	+	1519744..1525082	ankyrin repeat family protein, putative, expressed
LOC_Os06g03800	Os.50129.1.S1_at	11/11	6	+	1519744..1525082	ankyrin repeat family protein, putative, expressed
LOC_Os06g03810	OsAffx.22594.1.S1_x_at	11/11	6	+	1525945..1526622	expressed protein
LOC_Os06g03820	OsAffx.27447.1.S1_at	9/11	6	+	1529190..1530371	hypothetical protein
LOC_Os06g03830	Os.4281.1.S1_x_at	11/11	6	+	1538039..1541211	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27446.1.S1_at--71--249	1	Chr06:1513035..1513059 (25 bp)	AACAGCCCGGTGAGCCAGAGCAGAG	LOC_Os06g03790
OsAffx.27446.1.S1_at--428--169	1	Chr06:1513047..1513071 (25 bp)	AGCCAGAGCAGAGGCGAAAACGTCT	LOC_Os06g03790
OsAffx.27446.1.S1_at--1003--503	1	Chr06:1513054..1513078 (25 bp)	GCAGAGGCGAAAACGTCTTTGCTGT	LOC_Os06g03790
OsAffx.27446.1.S1_at--824--837	1	Chr06:1513059..1513083 (25 bp)	GGCGAAAACGTCTTTGCTGTTACTG	LOC_Os06g03790
OsAffx.27446.1.S1_at--1021--237	1	Chr06:1513064..1513088 (25 bp)	AAACGTCTTTGCTGTTACTGGTCCA	LOC_Os06g03790
OsAffx.27446.1.S1_at--640--401	1	Chr06:1513067..1513091 (25 bp)	CGTCTTTGCTGTTACTGGTCCACCA	LOC_Os06g03790
OsAffx.27446.1.S1_at--1037--195	2	Chr06:1513080..1513104 (25 bp)	ACTGGTCCACCAGTGACAGCCGATG	LOC_Os06g03790
OsAffx.27446.1.S1_at--747--779	1	Chr06:1513083..1513107 (25 bp)	GGTCCACCAGTGACAGCCGATGCCG	LOC_Os06g03790
OsAffx.27446.1.S1_at--751--157	1	NONE	AGCGGCGCGAGGTGTTTAGGCCGTA	NONE
OsAffx.27446.1.S1_at--289--389	1	Chr06:1514038..1514060 (23 bp)	TTAGGCCGTAGTTGGAAGGCTTCCG	LOC_Os06g03790
OsAffx.27446.1.S1_at--116--661	1	Chr06:1514046..1514070 (25 bp)	GTTGGAAGGCTTCCGAGTTACGCCT	LOC_Os06g03790

Target Sequence

AACAGCCCGGTGAGCCAGAGCAGAGGCGAAAACGTCTTTGCTGTTACTGGTCCACCAGTGACAGCCGATGCCGCGCTCCC
CACCAGCAGTGGCGCCGCGCCGAGCGCGAACAGCCAGCCGAGCAGGCCCGCATGCTGGGAAGAGGTCACCGATGCCGGCG
GGAGCGGCGCGAGGTGTTTAGGCCGTAGTTGGAAGGCTTCCGAGTTACGCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis