Browse Element(s) Details


Os.4282.1.S1_at

Description gb:AK102435.1
DB_XREF= gi:32987644
TID=Os.4282.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (AL049525) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093J06, full insert sequence.
FL= gb:AK061998.1 gb:AK102435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0384011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03800Os.44806.1.A1_x_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03800Os.50129.1.S1_at11/116+1519744..1525082ankyrin repeat family protein, putative, expressed
LOC_Os06g03810OsAffx.22594.1.S1_x_at11/116+1525945..1526622expressed protein
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4282.1.S1_at--53--3691Chr06:1543602..1543626 (25 bp)
CTTTGATGCTGTTGGCTATGGCTCT
LOC_Os06g03840
Os.4282.1.S1_at--354--10111Chr06:1543586..1543610 (25 bp)
TATGGCTCTGTGGTTTTCCCAGCAT
LOC_Os06g03840
Os.4282.1.S1_at--1078--10292Chr06:14089924..14090071 (24 bp)
TTTCCCAGCATCATCCAGAGTTCAT
NONE
Os.4282.1.S1_at--1104--4671Chr06:1543542..1543566 (25 bp)
GCGGATGTGGCTTCCATTCATGCAA
LOC_Os06g03840
Os.4282.1.S1_at--284--6251Chr06:1543467..1543491 (25 bp)
GATGGATGCAGACTTGTTTCAGAAC
LOC_Os06g03840
Os.4282.1.S1_at--47--3571Chr06:1543405..1543429 (25 bp)
CATCAGGTGATCAGGCAGACATTCT
LOC_Os06g03840
Os.4282.1.S1_at--138--6751Chr06:1543353..1543377 (25 bp)
GTTCAGATATCCTGATCTCACTGAG
LOC_Os06g03840
Os.4282.1.S1_at--667--1791Chr06:1543255..1543279 (25 bp)
ACCCCACAGTCAGCTTGTAACTTTG
LOC_Os06g03840
Os.4282.1.S1_at--276--7451Chr06:1543107..1543131 (25 bp)
GTGTAATACACTTGAGCTTTCTTGC
LOC_Os06g03840
Os.4282.1.S1_at--1115--5911Chr06:1543094..1543118 (25 bp)
GAGCTTTCTTGCAGTATGTTCATTA
LOC_Os06g03840
Os.4282.1.S1_at--1146--10531Chr06:1543049..1543073 (25 bp)
TTCTTCCTGACCTGAGACATTTCGA
LOC_Os06g03840
Target Sequence 
CTTTGATGCTGTTGGCTATGGCTCTGTGGTTTTCCCAGCATCATCCAGAGTTCATTTTNTGCGGATGTGGCTTCCATTCA
TGCAAACAACGAAGCGCTTGCTTGATGAAAAGTCGAAGGATGATGCGATTCCACAGATGGATGCAGACTTGTTTCAGAAC
ATTGAGGGTGCAATAGTCTCATTGGTGTTAGCATTGCCATCAGGTGATCAGGCAGACATTCTTGGAGAGTGGATGAAGAA
TGCAGAGCAGTTCAGATATCCTGATCTCACTGAGGCATTTGAGGTGTGGTGTTACCGTAGTAAAACGGCAAAGAGGAGGC
TAGTAGGAGGGCTAAACGGGAGTGGCAACCCCACAGTCAGCTTGTAACTTTGTAAGGCTACCATTAATTTTAATCTTTTG
TTGTAGCCTATACAAGTCAGTGAAATCAGGTGGTTGGTACCAAGCAATATACCAACTAGATTTTCATTGTTGTATGTTGT
AAAACAACTGCTCATGTGTAATACACTTGAGCTTTCTTGCAGTATGTTCATTACCCNTTGTCCAAGTTCACTACTTCTTC
CTGACCTGAGACATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis