Browse Element(s) Details


Os.15349.1.S1_a_at

Description gb:NM_185492.1
DB_XREF= gi:34898069
TID=Os.15349.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (AL031018) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (AL031018) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0386011/11SPX domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03820OsAffx.27447.1.S1_at9/116+1529190..1530371hypothetical protein
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed
LOC_Os06g03920Os.4290.1.S1_at11/116+1579343..1580869expressed protein
LOC_Os06g03920OsAffx.17234.1.S1_at1/116+1579343..1580869expressed protein
LOC_Os06g03930Os.4291.1.S1_at11/116+1580992..1584766Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15349.1.S1_a_at--203--5311Chr06:1558407..1558431 (25 bp)
GAAGGCACACATGATTCTCGCAAAC
LOC_Os06g03860
Os.15349.1.S1_a_at--536--4151Chr06:1558433..1558457 (25 bp)
CGCGACTTCGATTGGTTCAGCATAC
LOC_Os06g03860
Os.15349.1.S1_a_at--142--3571Chr06:1558453..1558477 (25 bp)
CATACAGATTGCTTACACCTTCAGT
LOC_Os06g03860
Os.15349.1.S1_a_at--944--2871Chr06:1558891..1558914 (24 bp)
AAGGTCCAATTGCTGATATATTTCA
LOC_Os06g03860
Os.15349.1.S1_a_at--440--1831Chr06:1558924..1558948 (25 bp)
ACGCGATGGAGATTTTACTTTCTGA
LOC_Os06g03860
Os.15349.1.S1_a_at--27--351Chr06:1558984..1559008 (25 bp)
ATACAAGTGCAGTGGCGATATTTCT
LOC_Os06g03860
Os.15349.1.S1_a_at--268--4631Chr06:1558998..1559022 (25 bp)
GCGATATTTCTAGCAATTCTTGGCC
LOC_Os06g03860
Os.15349.1.S1_a_at--820--111Chr06:1559013..1559037 (25 bp)
ATTCTTGGCCTAACAGTTCTTCCTG
LOC_Os06g03860
Os.15349.1.S1_a_at--882--6731Chr06:1559028..1559052 (25 bp)
GTTCTTCCTGTTAATGCTGTTGTTG
LOC_Os06g03860
Os.15349.1.S1_a_at--12--3871Chr06:1559044..1559068 (25 bp)
CTGTTGTTGGGACATATATCAGCAA
LOC_Os06g03860
Os.15349.1.S1_a_at--215--251Chr06:1559059..1559083 (25 bp)
ATATCAGCAACATGTTCGAGGACAG
LOC_Os06g03860
Target Sequence 
GAAGGCACACATGATTCTCGCAAACCCGCGACTTCGATTGGTTCAGCATACAGATTGCTTACACCTTCAGTAAAGGTCCA
ATTGCTGATATATTTCATGCTCNAATACGCGATGGAGATTTTACTTTCTGAGNNANNTNTNNTTACNAATCACTATTTCA
ATTGGAATACAAGTGCAGTGGCGATATTTCTAGCAATTCTTGGCCTAACAGTTCTTCCTGTTAATGCTGTTGTTGGGACA
TATATCAGCAACATGTTCGAGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15349.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis