Browse Element(s) Details


OsAffx.15250.1.S1_at

Description tigr:9634.m00300
TID=OsAffx.15250.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0389011/11esterase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03830Os.4281.1.S1_x_at11/116+1538039..1541211oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os06g03840Os.4282.1.S1_at11/116+1543046..1545217expressed protein
LOC_Os06g03850Os.18518.1.S1_at11/116+1546060..1549638impaired sucrose induction 1, putative, expressed
LOC_Os06g03860Os.15349.1.S1_a_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.2.S1_s_at11/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03860OsAffx.22593.1.S1_x_at10/116+1553896..1560066SPX domain-containing protein, putative, expressed
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed
LOC_Os06g03920Os.4290.1.S1_at11/116+1579343..1580869expressed protein
LOC_Os06g03920OsAffx.17234.1.S1_at1/116+1579343..1580869expressed protein
LOC_Os06g03930Os.4291.1.S1_at11/116+1580992..1584766Cytochrome P450 family protein, expressed
LOC_Os06g03940Os.4292.2.S1_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_x_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_at8/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.4292.1.S1_x_at4/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940OsAffx.30727.1.S1_at1/116+1587474..1595160Spastin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15250.1.S1_at--458--7191Chr06:1564611..1564635 (25 bp)
GTCGGCGTACTGCTCTACTGCTGCC
LOC_Os06g03890
OsAffx.15250.1.S1_at--897--9911Chr06:1564626..1564650 (25 bp)
TACTGCTGCCTCTGCTTGTTCGTCG
LOC_Os06g03890
OsAffx.15250.1.S1_at--4--4711Chr06:1564681..1564705 (25 bp)
GCGGCGATATTAAGAGGCAGTACAA
LOC_Os06g03890
OsAffx.15250.1.S1_at--730--2051Chr06:1564759..1564783 (25 bp)
ACATGTCGGCGGTGAATCGTACCGA
LOC_Os06g03890
OsAffx.15250.1.S1_at--646--7351Chr06:1564770..1564794 (25 bp)
GTGAATCGTACCGAGCTCACCATGG
LOC_Os06g03890
OsAffx.15250.1.S1_at--476--8251Chr06:1565065..1565089 (25 bp)
GGCACGGCGCTGGACTTCGACTTCT
LOC_Os06g03890
OsAffx.15250.1.S1_at--197--3931Chr06:1565069..1565093 (25 bp)
CGGCGCTGGACTTCGACTTCTTCGA
LOC_Os06g03890
OsAffx.15250.1.S1_at--316--5691Chr06:1565083..1565107 (25 bp)
GACTTCTTCGAGTCCATCGGCGTCG
LOC_Os06g03890
OsAffx.15250.1.S1_at--623--9571Chr06:1565087..1565111 (25 bp)
TCTTCGAGTCCATCGGCGTCGGCTT
LOC_Os06g03890
OsAffx.15250.1.S1_at--772--4031Chr06:1565114..1565138 (25 bp)
CGTTCTGGAACTACGGCTCCATGAA
LOC_Os06g03890
OsAffx.15250.1.S1_at--717--7731Chr06:1565150..1565174 (25 bp)
GGTGGTTCCGCGACTTGCTGCCCTC
LOC_Os06g03890
Target Sequence 
GTCGGCGTACTGCTCTACTGCTGCCTCTGCTTGTTCGTCGGCGTCGTCGCCGGCGAGCATGGCGGCGGCGGCGGCGATAT
TAAGAGGCAGTACAAGGCCATGTTCAGCTTCGGTGACTCGCTGACGGACACGGGCAACATCTGCGTGAACATGTCGGCGG
TGAATCGTACCGAGCTCACCATGGCGCAGCCTCCCTACGGCATCACCTTCTTCGGCCACCCCACCTGCCGCTGCTCCGAC
GGCCGCCTCGTCGTCGACTTCCTCGCGGAGGGGTTGGGGCTGCCGCTGCTGCCGCCGTCGAAGGTGATCGGCGGCGACTT
CCGCCGGGGAGCCAACATGGCCATCGTCGGCGGCACGGCGCTGGACTTCGACTTCTTCGAGTCCATCGGCGTCGGCTTCC
CGTTCTGGAACTACGGCTCCATGAACGTCCAGCTCCGGTGGTTCCGCGACTTGCTGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis