Browse Element(s) Details

Os.4291.1.S1_at

Description

gb:AK066075.1
DB_XREF= gi:32976093
TID=Os.4291.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU056036(S20239),C72753(E2173), AU056035(S20239) correspond to a region of the predicted gene.~Similar to putative cytochrome P-450 (AC003680) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057B08, full insert sequence.
FL= gb:AK066075.1 gb:AK061981.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03930	11/11	Cytochrome P450 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03860	Os.15349.1.S1_a_at	11/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.2.S1_s_at	11/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.1.S1_at	10/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.1.S1_x_at	10/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03880	OsAffx.4712.1.S1_at	11/11	6	+	1563911..1564192	hypothetical protein
LOC_Os06g03890	OsAffx.15250.1.S1_at	11/11	6	+	1564578..1565226	esterase, putative
LOC_Os06g03900	OsAffx.27449.1.S1_at	11/11	6	+	1571423..1572803	esterase, putative, expressed
LOC_Os06g03910	Os.4289.1.S1_at	11/11	6	+	1573604..1576094	hydrolase, NUDIX family protein, expressed
LOC_Os06g03920	Os.4290.1.S1_at	11/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03920	OsAffx.17234.1.S1_at	1/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03930	Os.4291.1.S1_at	11/11	6	+	1580992..1584766	Cytochrome P450 family protein, expressed
LOC_Os06g03940	Os.4292.2.S1_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_x_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_at	8/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.4292.1.S1_x_at	4/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	OsAffx.30727.1.S1_at	1/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03950	OsAffx.15251.1.S1_at	11/11	6	+	1597468..1597776	hypothetical protein
LOC_Os06g03960	OsAffx.4714.1.S1_at	10/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03960	OsAffx.17408.1.S1_at	1/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03970	Os.4294.1.S1_a_at	11/11	6	+	1604743..1611389	Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0019825	molecular_function	oxygen binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4291.1.S1_at--464--681	1	Chr06:1581908..1581932 (25 bp)	GTTTATCAGCAAGAGAGCCCGTTCA	LOC_Os06g03930
Os.4291.1.S1_at--456--167	1	Chr06:1581893..1581917 (25 bp)	AGCCCGTTCAAGTTTGTGTCTTTCA	LOC_Os06g03930
Os.4291.1.S1_at--195--303	1	Chr06:1581497..1581518 (22 bp)	AATGCTGGGCCACGTATCTGCTTGG	LOC_Os06g03930
Os.4291.1.S1_at--758--535	1	Chr06:1581447..1581471 (25 bp)	GAAGATCATGGCTGCTACCCTGATA	LOC_Os06g03930
Os.4291.1.S1_at--885--73	1	Chr06:1581368..1581392 (25 bp)	ATGTTCACTCTCCATATCGACAATG	LOC_Os06g03930
Os.4291.1.S1_at--340--53	1	Chr06:1581353..1581377 (25 bp)	ATCGACAATGGTCTCCATCTGCTTG	LOC_Os06g03930
Os.4291.1.S1_at--208--489	1	Chr06:1581333..1581357 (25 bp)	GCTTGCAAACCCTCGAGAAATTTCA	LOC_Os06g03930
Os.4291.1.S1_at--639--485	1	Chr06:1581291..1581315 (25 bp)	GCTACTGCATCCTTTTGTTATTTTA	LOC_Os06g03930
Os.4291.1.S1_at--21--907	1	Chr06:1581256..1581280 (25 bp)	TGCATTTCTAACATCCGTCCTATTA	LOC_Os06g03930
Os.4291.1.S1_at--25--975	1	Chr06:1581219..1581243 (25 bp)	TAATCTGTCCCAAGTAGTCGTATGA	LOC_Os06g03930
Os.4291.1.S1_at--79--693	1	Chr06:1581040..1581064 (25 bp)	GTATGTGCCTGGAAAGCTATAGCTT	LOC_Os06g03930

Target Sequence

GTTTATCAGCAAGAGAGCCCGTTCAAGTTTGTGTCTTTCAATGCTGGGCCACGTATCTGCTTGGGGAAAGAATTTGCACA
CAGGCAGATGAAGATCATGGCTGCTACCCTGATACATTTCTTCAAGTTCAGACTGGAAGATGAATCCAAGGAGCCAATCT
ATAAAACAATGTTCACTCTCCATATCGACAATGGTCTCCATCTGCTTGCAAACCCTCGAGAAATTTCACCATGAACCCCA
AACAAGCTACTGCATCCTTTTGTTATTTTATTGGAACATATGCATTTCTAACATCCGTCCTATTAGGCAAGTAATAATAA
TCTGTCCCAAGTAGTCGTATGAAAACAACAAAGTAGCAATGGGACAATTTGCCCGGTAAAAGTAAGGTGCTTGTACAATT
TAATATGCTTGTAATAGGGTGCTTAAAGAAAGAGGATGCAGCTATATCATCAACTACGTATTTAAGCTTCATTTCTTTGG
ATGCAANAANNNNNNTGTATGTGCCTGGAAAGCTATAGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis