Browse Element(s) Details

Os.4294.1.S1_a_at

Description

gb:AY332474.1
DB_XREF= gi:33242912
GEN=PK3
TID=Os.4294.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4294 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transmembrane protein kinase (PK3) mRNA, complete cds.
PROD=transmembrane protein kinase
FL= gb:AY332474.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03970	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03920	Os.4290.1.S1_at	11/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03920	OsAffx.17234.1.S1_at	1/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03930	Os.4291.1.S1_at	11/11	6	+	1580992..1584766	Cytochrome P450 family protein, expressed
LOC_Os06g03940	Os.4292.2.S1_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_x_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_at	8/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.4292.1.S1_x_at	4/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	OsAffx.30727.1.S1_at	1/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03950	OsAffx.15251.1.S1_at	11/11	6	+	1597468..1597776	hypothetical protein
LOC_Os06g03960	OsAffx.4714.1.S1_at	10/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03960	OsAffx.17408.1.S1_at	1/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03970	Os.4294.1.S1_a_at	11/11	6	+	1604743..1611389	Leucine Rich Repeat family protein, expressed
LOC_Os06g03980	Os.24969.1.A1_at	11/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	OsAffx.1574.1.S1_at	1/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	Os.50299.1.S1_at	1/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03990	Os.16220.1.A1_at	11/11	6	+	1628796..1632617	aminotransferase ACS12, putative, expressed
LOC_Os06g04000	Os.4299.1.S1_at	11/11	6	+	1634099..1635030	Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010	Os.10575.1.S1_at	11/11	6	+	1635529..1639861	GAGA binding protein-like family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887	biological_process	organ morphogenesis
GO:0009965	biological_process	leaf morphogenesis
GO:0016049	biological_process	cell growth
GO:0030155	biological_process	regulation of cell adhesion
GO:0042831	biological_process	defense response to pathogenic fungi
GO:0051301	biological_process	cell division
GO:0005739	cellular_component	mitochondrion
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity
GO:0019199	molecular_function	transmembrane receptor protein kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4294.1.S1_a_at--507--59	1	Chr06:1610352..1610376 (25 bp)	ATGCCAGGACTTCCAGGCTCAATGA	LOC_Os06g03970
Os.4294.1.S1_a_at--949--49	1	Chr06:1610402..1610426 (25 bp)	ATCGTCCTTCTGGAATTGCTCACAG	LOC_Os06g03970
Os.4294.1.S1_a_at--479--1067	1	Chr06:1610417..1610441 (25 bp)	TTGCTCACAGGGAAGAAGGCCGTCG	LOC_Os06g03970
Os.4294.1.S1_a_at--757--561	1	Chr06:1610441..1610465 (25 bp)	GACAACGAATCGAACTTGCATCAAT	LOC_Os06g03970
Os.4294.1.S1_a_at--6--319	1	Chr06:1610462..1610617 (25 bp)	CAATTGATACTCTCCAAAGCTGATG	LOC_Os06g03970
Os.4294.1.S1_a_at--1101--187	1	Chr06:1610659..1610683 (25 bp)	ACGTGCACGGACATGGGACTGGTCA	LOC_Os06g03970
Os.4294.1.S1_a_at--366--869	2	Chr06:1610708..1610732 (25 bp)	TGTGCACCAAGAGGCACCCTTCAGA	LOC_Os06g03970
Os.4294.1.S1_a_at--175--33	1	Chr06:1610791..1610815 (25 bp)	ATGACAACGCCCAAGACGGTGGACT	LOC_Os06g03970
Os.4294.1.S1_a_at--1149--139	1	Chr06:1610804..1610828 (25 bp)	AGACGGTGGACTACTCCCGGTTGCT	LOC_Os06g03970
Os.4294.1.S1_a_at--536--107	1	Chr06:1610859..1610883 (25 bp)	AGGGCACGACGTGACCGACATCGGC	LOC_Os06g03970
Os.4294.1.S1_a_at--53--331	1	Chr06:1610943..1610967 (25 bp)	CACAATGTGATCTTCTCCAAACCTC	LOC_Os06g03970

Target Sequence

ATGCCAGGACTTCCAGGCTCAATGAGAAATCTGATGTGTACAGCTTCGGCATCGTCCTTCTGGAATTGCTCACAGGGAAG
AAGGCCGTCGACAACGAATCGAACTTGCATCAATTGATACTCTCCAAAGCTGATGNCAACACAGTCATGGAGGCANTGGN
CTCGGAGGTGTCAGTGACGTGCACGGACATGGGACTGGTCAGGAAGGCCTTCCAGCTCGCCCTTCTGTGCACCAAGAGGC
ACCCTTCAGACCGGCCGACCATGCACGAGGTTGCAAGGGTNCTGCTCTCCCTGCTGCCGGCCTCCGCCATGACAACGCCC
AAGACGGTGGACTACTCCCGGTTGCTGGCGTCGACGACGACGGCGGCCGACATGCGAGGGCACGACGTGACCGACATCGG
CGACAACAGCTCCTCCGACGAGCAGTGGTTCGTCAGGTTCGGCGAGGTCATATCCAAGCACACAATGTGATCTTCTCCAA
ACCTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis