Browse Element(s) Details


OsAffx.1574.1.S1_at

Description gb:NM_185502.1
DB_XREF= gi:34898089
TID=OsAffx.1574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (AL031018) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g039801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03940Os.4292.2.S1_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_x_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_at8/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.4292.1.S1_x_at4/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940OsAffx.30727.1.S1_at1/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03950OsAffx.15251.1.S1_at11/116+1597468..1597776hypothetical protein
LOC_Os06g03960OsAffx.4714.1.S1_at10/116+1598329..1600781hypothetical protein
LOC_Os06g03960OsAffx.17408.1.S1_at1/116+1598329..1600781hypothetical protein
LOC_Os06g03970Os.4294.1.S1_a_at11/116+1604743..1611389Leucine Rich Repeat family protein, expressed
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1574.1.S1_at--797--5351Chr06:1612733..1612752 (20 bp)
GAAACTAACCATGACGCCGGAGTTC
LOC_Os06g03980
OsAffx.1574.1.S1_at--839--671Chr06:1612122..1612151 (24 bp)
ATGACGCCGGAGTTCACAGTCCAGT
NONE
OsAffx.1574.1.S1_at--969--2111Chr06:1612107..1612131 (25 bp)
ACAGTCCAGTCCAGTTTCTGCTAGA
NONE
OsAffx.1574.1.S1_at--483--7271Chr06:1612099..1612123 (25 bp)
GTCCAGTTTCTGCTAGAACCTGTGA
NONE
OsAffx.1574.1.S1_at--1045--5431Chr06:1612084..1612108 (25 bp)
GAACCTGTGACAGATTCAACATCAT
NONE
OsAffx.1574.1.S1_at--189--3051Chr06:1612048..1612072 (25 bp)
CAATCAAAAACCACGGAATTTCGAG
NONE
OsAffx.1574.1.S1_at--1072--5211Chr06:1612033..1612057 (25 bp)
GAATTTCGAGGTTCCAACGCAGGAC
NONE
OsAffx.1574.1.S1_at--999--5991Chr06:1612029..1612050 (22 bp)
GAGGTTCCAACGCAGGACGAAAACA
NONE
OsAffx.1574.1.S1_at--830--8091NONE
GGACGAAAACACAGCAACGAGCCAA
NONE
OsAffx.1574.1.S1_at--750--2591Chr06:1611500..1611524 (25 bp)
AACGAGCCAACGAAGCAGGACATAA
NONE
OsAffx.1574.1.S1_at--511--2031Chr06:1611473..1611497 (25 bp)
ACTAGGCATGGAGATTCAGAGTTTC
NONE
Target Sequence 
GAAACTAACCATGACGCCGGAGTTCACAGTCCAGTCCAGTTTCTGCTAGAACCTGTGACAGATTCAACATCATTTGACGA
AAACCAATCAAAAACCACGGAATTTCGAGGTTCCAACGCAGGACGAAAACACAGCAACGAGCCAACGAAGCAGGACATAA
ATACTAGGCATGGAGATTCAGAGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis