Browse Element(s) Details

Os.24969.1.A1_at

Description

gb:AK101132.1
DB_XREF= gi:32986341
TID=Os.24969.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026D22, full insert sequence.
FL= gb:AK101132.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03980	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03940	Os.4292.2.S1_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_x_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_at	8/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.4292.1.S1_x_at	4/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	OsAffx.30727.1.S1_at	1/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03950	OsAffx.15251.1.S1_at	11/11	6	+	1597468..1597776	hypothetical protein
LOC_Os06g03960	OsAffx.4714.1.S1_at	10/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03960	OsAffx.17408.1.S1_at	1/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03970	Os.4294.1.S1_a_at	11/11	6	+	1604743..1611389	Leucine Rich Repeat family protein, expressed
LOC_Os06g03980	Os.24969.1.A1_at	11/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	OsAffx.1574.1.S1_at	1/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	Os.50299.1.S1_at	1/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03990	Os.16220.1.A1_at	11/11	6	+	1628796..1632617	aminotransferase ACS12, putative, expressed
LOC_Os06g04000	Os.4299.1.S1_at	11/11	6	+	1634099..1635030	Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010	Os.10575.1.S1_at	11/11	6	+	1635529..1639861	GAGA binding protein-like family protein, expressed
LOC_Os06g04020	Os.12784.1.S1_at	10/11	6	+	1641583..1642800	linker histone H1 and H5 family protein, expressed
LOC_Os06g04020	Os.49642.1.S1_x_at	4/11	6	+	1641583..1642800	linker histone H1 and H5 family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24969.1.A1_at--365--1019	1	Chr06:1613349..1613461 (25 bp)	TATATTACCACCAAGGACTGCAAAG	LOC_Os06g03980
Os.24969.1.A1_at--923--511	2	Chr06:1613208..1613329 (25 bp)	GCAAAGCTAGCTATGGTAGATCCAG	LOC_Os06g03980
Os.24969.1.A1_at--659--785	1	Chr06:1613194..1613215 (22 bp)	GGTAGATCCAGTCAGTCAAGACATA	LOC_Os06g03980
Os.24969.1.A1_at--991--559	1	Chr06:1613145..1613169 (25 bp)	GACAATTCCTGGTTCAGATTCCTTT	LOC_Os06g03980
Os.24969.1.A1_at--171--9	1	Chr06:1613128..1613152 (25 bp)	ATTCCTTTTCTCCACCTGAACAAAG	LOC_Os06g03980
Os.24969.1.A1_at--979--1085	1	Chr06:1612913..1612937 (25 bp)	TTGGACAGTAGGATCTCGACTTCAT	LOC_Os06g03980
Os.24969.1.A1_at--1064--1019	1	Chr06:1612858..1612882 (25 bp)	TATTTTGACTTGAAGGCACCGACCA	LOC_Os06g03980
Os.24969.1.A1_at--816--893	1	Chr06:1612717..1612741 (25 bp)	TGACGCCGGTGTGTACTCCAGATCT	LOC_Os06g03980
Os.24969.1.A1_at--325--199	1	Chr06:1612703..1612727 (25 bp)	ACTCCAGATCTGTAACTTGTTGCCA	LOC_Os06g03980
Os.24969.1.A1_at--795--251	1	Chr06:1612690..1612714 (25 bp)	AACTTGTTGCCAATCATCATCCAGC	LOC_Os06g03980
Os.24969.1.A1_at--893--353	1	Chr06:1612673..1612697 (25 bp)	CATCCAGCAAAGTTGCTTGCTTGCT	LOC_Os06g03980

Target Sequence

TATATTACCACCAAGGACTGCAAAGAGAACATGATTGGTAACATGCAAAGCTAGCTATGGTAGATCCAGTCAGTCAAGAC
ATACAAAACATAGGAATTNTTCTCTTTGACAATTCCTGGTTCAGATTCCTTTTCTCCACCTGAACAAAGGNTAAGNGTCT
GTTTTGGACAGTAGGATCTCGACTTCATTTGAGTTTTGACAAAGATGGAGCGATACATTATTTTGACTTGAAGGCACCGA
CCAAGGCACCGTCCCNGCCATCCCCGGCAACCTCCCGTNTCCGCTGCCGTGCAGCTGAACATAATTCCGTACCTGCTCGC
GGCCATGGCGGAGATCGATTTGTACAGAGAAACTAACCNTGACGCCGGTGTGTACTCCAGATCTGTAACTTGTTGCCAAT
CATCATCCAGCAAAGTTGCTTGCTTGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis