Browse Element(s) Details


Os.12784.1.S1_at

Description gb:U74296.1
DB_XREF= gi:1661161
GEN=KCDL917
TID=Os.12784.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12784 (NCBI UniGene Cluster)
DEF=Oryza sativa water stress inducible protein (KCDL917) mRNA, complete cds.
PROD=water stress inducible protein
FL= gb:AK069863.1 gb:U74296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0402010/11linker histone H1 and H5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12784.1.S1_at--860--4711NONE
GCTGTATCCCCTGTATAGCCTAGGT
NONE
Os.12784.1.S1_at--536--10171Chr06:1641850..1641874 (25 bp)
TATAGCCTAGGTGTTGTCGCTTACC
LOC_Os06g04020
Os.12784.1.S1_at--13--7751Chr06:1641841..1641865 (25 bp)
GGTGTTGTCGCTTACCTAGTAGTAG
LOC_Os06g04020
Os.12784.1.S1_at--405--3711Chr06:1641826..1641850 (25 bp)
CTAGTAGTAGTTCGCCATCGTCGTC
LOC_Os06g04020
Os.12784.1.S1_at--118--7212Chr06:1641807..1641831 (25 bp)
GTCGTCTCGTCTGCTTCGATCGATC
LOC_Os06g04020
Os.12784.1.S1_at--225--531Chr06:1641785..1641809 (25 bp)
ATCGAGCGCTCTGTGTCCGGTGTGT
LOC_Os06g04020
Os.12784.1.S1_at--365--7471Chr06:1641762..1641786 (25 bp)
GTGTGTTGCGTTGTAGATAAGGTTT
LOC_Os06g04020
Os.12784.1.S1_at--315--1571Chr06:1641711..1641735 (25 bp)
AGCTACTGTAGCATATCGCCAAGAA
LOC_Os06g04020
Os.12784.1.S1_at--955--9311Chr06:1641696..1641720 (25 bp)
TCGCCAAGAAGCTGTAGTAATAAGA
LOC_Os06g04020
Os.12784.1.S1_at--648--351Chr06:1641677..1641701 (25 bp)
ATAAGATGATCTGGCGCTCGCAGCT
LOC_Os06g04020
Os.12784.1.S1_at--914--8451Chr06:1641666..1641690 (25 bp)
TGGCGCTCGCAGCTTTGCCTTATGA
LOC_Os06g04020
Target Sequence 
GCTGTATCCCCTGTATAGCCTAGGTGTTGTCGCTTACCTAGTAGTAGTTCGCCATCGTCGTCTCGTCTGCTTCGATCGAT
CGAGCGCTCTGTGTCCGGTGTGTGTGTTGCGTTGTAGATAAGGTTTGGGTTTCTTTTTGCAAGGGAGGAAGAAGCTACTG
TAGCATATCGCCAAGAAGCTGTAGTAATAAGATGATCTGGCGCTCGCAGCTTTGCCTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis