Browse Element(s) Details


Os.27000.2.S1_x_at

Description gb:AK101808.1
DB_XREF= gi:32987017
TID=Os.27000.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066L01, full insert sequence.
FL= gb:AK101808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0404011/11Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27000.2.S1_x_at--912--3451Chr06:1652646..1652670 (25 bp)
CAGTGACATTCTCATCGGACTCCAA
LOC_Os06g04040
Os.27000.2.S1_x_at--246--6671Chr06:1652702..1652726 (25 bp)
GTTGCATTATGGGAGCTCTATCCTC
LOC_Os06g04040
Os.27000.2.S1_x_at--1032--231Chr06:1652768..1652792 (25 bp)
ATATCCCAATAATATGGCCGGGCCT
LOC_Os06g04040
Os.27000.2.S1_x_at--1089--3751Chr06:1652815..1652839 (25 bp)
CTCTTGACTGGAGGAGCACACGGCG
LOC_Os06g04040
Os.27000.2.S1_x_at--107--5111Chr06:1652830..1652854 (25 bp)
GCACACGGCGGATGAATTAGAGTTA
LOC_Os06g04040
Os.27000.2.S1_x_at--625--4691Chr06:1652887..1652911 (25 bp)
GCGGAAGATCACGTGGCTAGCTCAT
LOC_Os06g04040
Os.27000.2.S1_x_at--158--9071Chr06:1652953..1652977 (25 bp)
TGCATCACTTTTCCTTCATTGGATG
LOC_Os06g04040
Os.27000.2.S1_x_at--1031--231Chr06:1653021..1653045 (25 bp)
ATATCCCAATTAATATGGCCGGGTC
LOC_Os06g04040
Os.27000.2.S1_x_at--32--8471Chr06:1653036..1653060 (25 bp)
TGGCCGGGTCTTCCATTGAGGCAAT
LOC_Os06g04040
Os.27000.2.S1_x_at--617--3191Chr06:1653057..1653081 (25 bp)
CAATGCCTCTGCTTCTTGACTAGAG
LOC_Os06g04040
Os.27000.2.S1_x_at--317--1691Chr06:1653171..1653195 (25 bp)
ACAGAACGGAGGATCCAGTTTTGCC
LOC_Os06g04040
Target Sequence 
CAGTGACATTCTCATCGGACTCCAAGCTGTTGGCTTCCNGCTCGGCGGATNCTACGGTTGCATTATGGGAGCTCTATCCT
CCCANAACAGATAGCCAAGTTGGTCTCAAANCGAGNGATGAAATATCCCAATAATATGGCCGGGCCTTCCTTNGAGGCGA
TGCCTCTNCCTCTTGACTGGAGGAGCACACGGCGGATGAATTAGAGTTANTTTATGACANGTTTNGAGTGTTTTTGACNC
GGCGGAAGATCACGTGGCTAGCTCATACNGATTCANGGGGGTNGGAGTTTTAATNTCCGACCCTCCTTGCATCACTTTTC
CTTCATTGGATGTCTTTCTCGCTTTAGCGAAATCGGTGTGGGAACGAGAGATGAAATATCCCAATTAATATGGCCGGGTC
TTCCATTGAGGCAATGCCTCTGCTTCTTGACTAGAGGAGCATAAGNCGGATGAATTAGAGCTACTTTATGATTTGTTTTA
GCATTTATGAAAGAAACTTAGCTTGTGAATTTGATGTGAAGGAACACAGAACGGAGGATCCAGTTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27000.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis