Browse Element(s) Details


Os.12277.1.S1_at

Description gb:AK062712.1
DB_XREF= gi:32972730
TID=Os.12277.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C03, full insert sequence.
FL= gb:AK062712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0407011/11Arginine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04080Os.54484.1.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04080Os.54484.2.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0006970biological_processresponse to osmotic stress
GO:0006979biological_processresponse to oxidative stress
GO:0009446biological_processputrescine biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0048316biological_processseed development
GO:0008792molecular_functionarginine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12277.1.S1_at--447--3271Chr06:1676074..1676098 (25 bp)
CAAAATCCCGTCCTAGAGTTCTTCT
LOC_Os06g04070
Os.12277.1.S1_at--108--2431Chr06:1676037..1676061 (25 bp)
AAAACTTCCTCTTTTGGCATCCTTG
LOC_Os06g04070
Os.12277.1.S1_at--970--8451Chr06:1676023..1676047 (25 bp)
TGGCATCCTTGATTCAATTTCCCTT
LOC_Os06g04070
Os.12277.1.S1_at--450--4891Chr06:1675953..1675977 (25 bp)
GCTTTAGATTTCTTATCCTTCTTCT
LOC_Os06g04070
Os.12277.1.S1_at--271--571Chr06:1675939..1675963 (25 bp)
ATCCTTCTTCTTGTTGCTAATCTCG
LOC_Os06g04070
Os.12277.1.S1_at--740--6671Chr06:1675927..1675951 (25 bp)
GTTGCTAATCTCGATCGATCCATCT
LOC_Os06g04070
Os.12277.1.S1_at--974--10772Chr03:13971269..13971293 (25 bp)
TTGATTCTTCGCTGCTAACGCCACC
NONE
Os.12277.1.S1_at--484--9811Chr06:1675851..1675875 (25 bp)
TAACGCCACCGAAACAGACAACAGA
LOC_Os06g04070
Os.12277.1.S1_at--124--5291Chr06:1675800..1675824 (25 bp)
GAAGGCTAACCTTTTTCTGTGGATT
LOC_Os06g04070
Os.12277.1.S1_at--1107--9451Chr06:1675785..1675809 (25 bp)
TCTGTGGATTTTAGCGTTCTCCGGT
LOC_Os06g04070
Os.12277.1.S1_at--35--3971Chr06:1675764..1675788 (25 bp)
CGGTTTGTGACGAGATGCCTGCGCT
LOC_Os06g04070
Target Sequence 
CAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCG
ATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAG
ACAACAGATTTACAGCAAAANAAAAAAAAANAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGA
CGAGATGCCTGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis