Browse Element(s) Details


Os.50054.1.S1_x_at

Description gb:AK062952.1
DB_XREF= gi:32972970
TID=Os.50054.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C09, full insert sequence.
FL= gb:AK062952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0409011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04080Os.54484.1.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04080Os.54484.2.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009901biological_processanther dehiscence
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50054.1.S1_x_at--544--9851Chr06:1699028..1699052 (25 bp)
TACACGCAGACTTGACGACCATGAA
LOC_Os06g04090
Os.50054.1.S1_x_at--358--851Chr06:1698946..1698970 (25 bp)
ATGGCGTATGCGTGCACTAACTCTA
LOC_Os06g04090
Os.50054.1.S1_x_at--886--2531Chr06:1698928..1698952 (25 bp)
AACTCTACTCTTAATCTGGTCGGTC
LOC_Os06g04090
Os.50054.1.S1_x_at--127--3911Chr06:1698913..1698937 (25 bp)
CTGGTCGGTCTACGCATATTGCATG
LOC_Os06g04090
Os.50054.1.S1_x_at--470--4991Chr06:1698893..1698917 (25 bp)
GCATGCATGCATGGACGACGGTATT
LOC_Os06g04090
Os.50054.1.S1_x_at--90--1131Chr06:1698840..1698864 (25 bp)
AGTTAGGGTTCCAGCGAGAGTACAA
LOC_Os06g04090
Os.50054.1.S1_x_at--285--5791Chr06:1698809..1698833 (25 bp)
GACGACGACACAATAGCTAGCTGAG
LOC_Os06g04090
Os.50054.1.S1_x_at--990--4851Chr06:1698794..1698818 (25 bp)
GCTAGCTGAGCTGGCCATGTGAGCA
LOC_Os06g04090
Os.50054.1.S1_x_at--485--431Chr06:1698748..1698772 (25 bp)
ATCTAACCGTCGATCGATCTGAGCC
LOC_Os06g04090
Os.50054.1.S1_x_at--925--471Chr06:1698732..1698756 (25 bp)
ATCTGAGCCGTTGATCGATCGATCG
LOC_Os06g04090
Os.50054.1.S1_x_at--1079--4611Chr06:1698664..1698688 (25 bp)
GCGAGTTGTTGTGTCGATCTGAAAC
LOC_Os06g04090
Target Sequence 
TACACGCAGACTTGACGACCATGAATAACGTATAATAATTGGAGACAAGAGGTGACGATGGAGATGATGCATCTAGACGT
GGATGGCGTATGCGTGCACTAACTCTACTCTTAATCTGGTCGGTCTACGCATATTGCATGCATGCATGGACGACGGTATT
GTACGTACGTGATCAATAATTAATTACTAGTTAGGGTTCCAGCGAGAGTACAAGACGACGACGACGACACAATAGCTAGC
TGAGCTGGCCATGTGAGCAAGCTCTAGACACTAGGTCAAGATCTAACCGTCGATCGATCTGAGCCGTTGATCGATCGATC
GACGATGATGGTGTTGATCGATCGAATTATAGTGCAGTGGTCGAGCGAGTTGTTGTGTCGATCTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50054.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis