Browse Element(s) Details


OsAffx.27450.1.S1_at

Description tigr:9634.m00325
TID=OsAffx.27450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27450.1.S1_at--126--4411Chr06:1722606..1722630 (25 bp)
GCCTACGAAATCATGCGCGCTAACG
LOC_Os06g04120
OsAffx.27450.1.S1_at--1092--9751Chr06:1722626..1722650 (25 bp)
TAACGGCCTAACTCGTGCATGGCAA
LOC_Os06g04120
OsAffx.27450.1.S1_at--373--111Chr06:1722671..1722695 (25 bp)
ATTCTCGACATGTAATCCCACCGAG
LOC_Os06g04120
OsAffx.27450.1.S1_at--221--7491Chr06:1724048..1724072 (25 bp)
GTGGGCATCAGACTCAATGGCAAGC
LOC_Os06g04120
OsAffx.27450.1.S1_at--57--5171Chr06:1724067..1724091 (25 bp)
GCAAGCAAGTGGCAGCTTCCATCAG
LOC_Os06g04120
OsAffx.27450.1.S1_at--189--7331Chr06:1724103..1724127 (25 bp)
GTGCAGGCTCATGAGACAGTCCAAT
LOC_Os06g04120
OsAffx.27450.1.S1_at--904--5651Chr06:1724117..1724141 (25 bp)
GACAGTCCAATTTGCAGCTCTGAGC
LOC_Os06g04120
OsAffx.27450.1.S1_at--626--8271Chr06:1724189..1724213 (25 bp)
GGCATGTCTGGCCAACAAGTGCAAA
LOC_Os06g04120
OsAffx.27450.1.S1_at--1113--10431Chr06:1724236..1724260 (25 bp)
TTAGATTGCGACTCATCACCAAAGT
LOC_Os06g04120
OsAffx.27450.1.S1_at--607--6171Chr06:1724271..1724295 (25 bp)
GAGGATGCATGCAATCTTGCCCTAG
LOC_Os06g04120
OsAffx.27450.1.S1_at--588--5011Chr06:1724337..1724361 (25 bp)
GCAGGATTAACATTTGTCCGTGTAA
LOC_Os06g04120
Target Sequence 
GCCTACGAAATCATGCGCGCTAACGGCCTAACTCGTGCATGGCAAAGTGCTAAAAAAGGCTGGGGATTCTCGACATGTAA
TCCCACCGAGTGGGCATCAGACTCAATGGCAAGCAAGTGGCAGCTTCCATCAGCACAGGCCTACGTGCAGGCTCATGAGA
CAGTCCAATTTGCAGCTCTGAGCTCAGACCAACTCCAACCCACAGTGCAAATGCAGAGGATGGGGAAACAGGCATGTCTG
GCCAACAAGTGCAAATCAAGACAGCACCATCAGGGAATTAGATTGCGACTCATCACCAAAGTCATTCATGGGGAGGATGC
ATGCAATCTTGCCCTAGCTAAGCAGGAGCATGACGGAAAAGGTAAAAGAGAACCCATAGCAGGATTAACATTTGTCCGTG
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis