Browse Element(s) Details


OsAffx.10296.1.S1_at

Description gb:NM_186013.1
DB_XREF= gi:34899111
TID=OsAffx.10296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0496C02.22 (P0496C02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g041501/11Magnesium-protoporphyrin O-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0046406molecular_functionmagnesium protoporphyrin IX methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10296.1.S1_at--919--5531NONE
GAAACATCTGGAAAATTTCACACGA
NONE
OsAffx.10296.1.S1_at--916--2393Chr07:27847936..27847960 (25 bp)
AAAAATACATCGAAGGTCCTCAACT
NONE
OsAffx.10296.1.S1_at--24--1171Chr07:27847969..27847993 (25 bp)
AGTTACAAAATCGTCGCGGAAAGAG
NONE
OsAffx.10296.1.S1_at--1146--2251Chr07:27847976..27848000 (25 bp)
AAATCGTCGCGGAAAGAGGTGCTCA
NONE
OsAffx.10296.1.S1_at--881--4071Chr07:27848287..27848310 (24 bp)
CGAGATGCTCGCGTCGATACGGTCG
NONE
OsAffx.10296.1.S1_at--686--5791Chr07:27848535..27848559 (25 bp)
GACGCCGACGTTGGTGCCATGTCCA
NONE
OsAffx.10296.1.S1_at--397--10851Chr07:27848545..27848569 (25 bp)
TTGGTGCCATGTCCACCACGGACGG
NONE
OsAffx.10296.1.S1_at--511--4672Chr07:27848569..27848593 (25 bp)
GCGGGAACCGCGTCCAGCTCGACAT
NONE
OsAffx.10296.1.S1_at--996--9351Chr07:27848587..27848611 (25 bp)
TCGACATCCGTGAGGGCCATGTACA
NONE
OsAffx.10296.1.S1_at--1058--8431Chr07:27848601..27848625 (25 bp)
GGCCATGTACAGACGGTGGCTGCCA
NONE
OsAffx.10296.1.S1_at--609--751Chr07:27848605..27848629 (25 bp)
ATGTACAGACGGTGGCTGCCACACT
NONE
Target Sequence 
GAAACATCTGGAAAATTTCACACGAAGAAAGAAAAAAGGAAAAAAAATACATCGAAGGTCCTCAACTTGTCAACGAGTTA
CAAAATCGTCGCGGAAAGAGGTGCTCACGTCGATGCGGTCGTCGTTGCCGCCGCCGGCGAGGTGGAGGGAGGGAGATGCG
GAGGTGCGGGCGGCGGGTGGGGAGGAGGCCGGCAGGGCGAGGCGAGAGCGATGCCCGGCGACGGGCGACACAGAAAGAGG
TGCTCGCGTCGATGCGGTCGTCGTCGTCACCGCCGAGATGCTCGCGTCGATACGGTCGTCGTCGTCGCTGCCGGCAAGCC
GTCGCCGGAGGACGCCGACGTTGGTGCCATGTCCACCACGGACGGCGGGAACCGCGTCCAGCTCGACATCCGTGAGGGCC
ATGTACAGACGGTGGCTGCCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis