Browse Element(s) Details


Os.4314.1.S1_at

Description gb:AK072859.1
DB_XREF= gi:32982882
TID=Os.4314.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143I01, full insert sequence.
FL= gb:AK100206.1 gb:AK105429.1 gb:AK072859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0413011/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4314.1.S1_at--1105--9291Chr06:1727699..1727723 (25 bp)
TCCGCCAGTACTACGTGGTTGTAAT
LOC_Os06g04130
Os.4314.1.S1_at--600--4831Chr06:1727672..1727696 (25 bp)
GCTACATTTACTTCACACGTGTCGT
LOC_Os06g04130
Os.4314.1.S1_at--1027--2171Chr06:1727658..1727682 (25 bp)
ACACGTGTCGTGGTTTATGCGCTGA
LOC_Os06g04130
Os.4314.1.S1_at--1027--6971Chr06:1727620..1727644 (25 bp)
GTACCGGTACCAATGGACCAGCTAT
LOC_Os06g04130
Os.4314.1.S1_at--924--1811Chr06:1727577..1727601 (25 bp)
ACCCTTGCATTCTATGTGTTCACTG
LOC_Os06g04130
Os.4314.1.S1_at--166--2231Chr06:1727549..1727573 (25 bp)
ACAAGTTCCGGCCTGAGGTGCATAA
LOC_Os06g04130
Os.4314.1.S1_at--300--7331Chr06:1727532..1727556 (25 bp)
GTGCATAACCCGTACTTTGCGATTG
LOC_Os06g04130
Os.4314.1.S1_at--783--6151Chr06:1727447..1727471 (25 bp)
GAGGATTTACAATTGCCGGTCCCTT
LOC_Os06g04130
Os.4314.1.S1_at--658--6511Chr06:1727402..1727426 (25 bp)
GATATTGTATGTGCCTCCAAAGGAC
LOC_Os06g04130
Os.4314.1.S1_at--284--3711Chr06:1727358..1727382 (25 bp)
CTAGTCCATATCCTTTTCTTTTCAT
LOC_Os06g04130
Os.4314.1.S1_at--265--2291Chr06:1727271..1727295 (25 bp)
AAATGCAGCAGCTTGGATTTGCCTT
LOC_Os06g04130
Target Sequence 
TCCGCCAGTACTACGTGGTTGTAATTTGCTACATTTACTTCACACGTGTCGTGGTTTATGCGCTGATGACCATCACCTCG
TACCGGTACCAATGGACCAGCTATGTGGCCAAGGAGCTGGCCACCCTTGCATTCTATGTGTTCACTGGATACAAGTTCCG
GCCTGAGGTGCATAACCCGTACTTTGCGATTGACGATGAGGAGGAGGAGGCTGCTGCTGAGGCACTCAAGTTGGATGATG
AATTTGAGCTATGAGGATTTACAATTGCCGGTCCCTTCTTTTGCCACTGATGATACAGATATTGTATGTGCCTCCAAAGG
ACAAATGGTATAGACTGGTATCTAGTCCATATCCTTTTCTTTTCATTTCAAGTTAGTTATATTTTTCTTGCTGTAACTGG
TTATGGTCAACCTTGTGTTTGTGTTAAGAAATGCAGCAGCTTGGATTTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis